Dawn: Rapid large-scale protein multiple sequence alignment and conservation analysis. - Darrell O. Ricke; Anna Shcherbina (HPEC, 2015)

Not Just a Black Box: Learning Important Features Through Propagating Activation Differences. - Avanti Shrikumar; Peyton Greenside; Anna Shcherbina; Anshul Kundaje (CoRR, 2016)

TF-MoDISco v0.4.4.2-alpha: Technical Note. - Avanti Shrikumar; Katherine Tian; Anna Shcherbina; Ziga Avsec; Abhimanyu Banerjee; Mahfuza Sharmin; Surag Nair; Anshul Kundaje (CoRR, 2018)