Probability of coding of a DNA sequence: an algorithm to predict translated reading frames from their thermodynamic characteristics. - Anna Tramontano; M. F. Macchiato (Nucleic Acids Res., 1986)

Evaluation of annotation strategies using an entire genome sequence. - Ioannis Iliopoulos; Sophia Tsoka; Miguel A. Andrade; Anton J. Enright; Mark Carroll; Patrick Poullet; Vasilis J. Promponas; Theodore Liakopoulos; Giorgos Palaios; Claude Pasquier; Stavros J. Hamodrakas; Javier Tamames; et al. (Bioinform., 2003)

Evaluating the usefulness of protein structure models for molecular replacement. - Alejandro Giorgetti; Domenico Raimondo; Adriana Erica Miele; Anna Tramontano (ECCB/JBI, 2005)

Identification of a novel putative mitogen-activated kinase cascade on human chromosome 21 by computational approaches. - Marialuisa Pellegrini-Calace; Anna Tramontano (Bioinform., 2006)

An analysis of the Sargasso Sea resource and the consequences for database composition. - Michael L. Tress; Domenico Cozzetto; Anna Tramontano; Alfonso Valencia (BMC Bioinform., 2006)

The PMDB Protein Model Database. - Tiziana Castrignanò; Paolo D'Onorio De Meo; Domenico Cozzetto; Ivano Giuseppe Talamo; Anna Tramontano (Nucleic Acids Res., 2006)

The MEPS server for identifying protein conformational epitopes. - Tiziana Castrignanò; Paolo D'Onorio De Meo; Danilo Carrabino; Massimiliano Orsini; Matteo Floris; Anna Tramontano (BMC Bioinform., 2007)

Editorial. - Anna Tramontano (ECCB, 2008)

PIGS: automatic prediction of antibody structures. - Paolo Marcatili; Alessandra Rosi; Anna Tramontano (Bioinform., 2008)

FunClust: a web server for the identification of structural motifs in a set of non-homologous protein structures. - Gabriele Ausiello; Pier Federico Gherardini; Paolo Marcatili; Anna Tramontano; Allegra Via; Manuela Helmer-Citterich (BMC Bioinform., 2008)

The MoVIN server for the analysis of protein interaction networks. - Paolo Marcatili; Giovanni Bussotti; Anna Tramontano (BMC Bioinform., 2008)

Editorial. - Dan Gusfield; Anna Tramontano (Bioinform., 2009)

Structural landscape of immunoglobulin lambda light chains. - Anna Chailyan; Davide Cirillo; Paolo Marcatili; Anna Tramontano (BCB, 2010)

PICMI: mapping point mutations on genomes. - Loredana Le Pera; Paolo Marcatili; Anna Tramontano (Bioinform., 2010)

An automatic method for identifying surface proteins in bacteria: SLEP. - Emanuela Giombini; Massimiliano Orsini; Danilo Carrabino; Anna Tramontano (BMC Bioinform., 2010)

MAISTAS: a tool for automatic structural evaluation of alternative splicing products. - Matteo Floris; Domenico Raimondo; Guido Leoni; Massimiliano Orsini; Paolo Marcatili; Anna Tramontano (Bioinform., 2011)

Identification of the Schistosoma mansoni Molecular Target for the Antimalarial Drug Artemether. - Rosalba Lepore; Silvia Simeoni; Domenico Raimondo; Antonia Caroli; Anna Tramontano; Allegra Via (J. Chem. Inf. Model., 2011)

Phospho3D 2.0: an enhanced database of three-dimensional structures of phosphorylation sites. - Andreas Zanzoni; Daniel Carbajo; Francesca Diella; Pier Federico Gherardini; Anna Tramontano; Manuela Helmer-Citterich; Allegra Via (Nucleic Acids Res., 2011)

Ten Simple Rules for Developing a Short Bioinformatics Training Course. - Allegra Via; Javier De Las Rivas; Teresa K. Attwood; David Landsman; Michelle D. Brazas; Jack A. M. Leunissen; Anna Tramontano; Maria Victoria Schneider (PLoS Comput. Biol., 2011)

Improving your target-template alignment with MODalign. - Alessandro Barbato; Pascal Benkert; Torsten Schwede; Anna Tramontano; Jan Kosinski (Bioinform., 2012)

A resource for benchmarking the usefulness of protein structure models. - Daniel Carbajo; Anna Tramontano (BMC Bioinform., 2012)

A database of immunoglobulins with integrated tools: DIGIT. - Anna Chailyan; Anna Tramontano; Paolo Marcatili (Nucleic Acids Res., 2012)

MODexplorer: an integrated tool for exploring protein sequence, structure and function relationships. - Jan Kosinski; Alessandro Barbato; Anna Tramontano (Bioinform., 2013)

TiPs: a database of therapeutic targets in pathogens and associated tools. - Rosalba Lepore; Anna Tramontano; Allegra Via (Bioinform., 2013)

Prediction of site-specific interactions in antibody-antigen complexes: the proABC method and server. - Pier Paolo Olimpieri; Anna Chailyan; Anna Tramontano; Paolo Marcatili (Bioinform., 2013)

ProCoCoA: A quantitative approach for analyzing protein core composition. - Silvia Bottini; Andrea Bernini; Matteo De Chiara; Diego Garlaschelli; Ottavia Spiga; Marco Dioguardi; Elisa Vannuccini; Anna Tramontano; Neri Niccolai (Comput. Biol. Chem., 2013)

FIDEA: a server for the functional interpretation of differential expression analysis. - Daniel D'Andrea; Luigi Grassi; Mariagiovanna Mazzapioda; Anna Tramontano (Nucleic Acids Res., 2013)

Improving the accuracy of the structure prediction of the third hypervariable loop of the heavy chains of antibodies. - Mario Abdel Messih; Rosalba Lepore; Paolo Marcatili; Anna Tramontano (Bioinform., 2014)

LoopIng: a template-based tool for predicting the structure of protein loops. - Mario Abdel Messih; Rosalba Lepore; Anna Tramontano (Bioinform., 2015)

Tabhu: tools for antibody humanization. - Pier Paolo Olimpieri; Paolo Marcatili; Anna Tramontano (Bioinform., 2015)

3USS: a web server for detecting alternative 3′UTRs from RNA-seq experiments. - Loredana Le Pera; Mariagiovanna Mazzapioda; Anna Tramontano (Bioinform., 2015)

Prediction of the permeability of neutral drugs inferred from their solvation properties. - Edoardo Milanetti; Domenico Raimondo; Anna Tramontano (Bioinform., 2016)

PepComposer: computational design of peptides binding to a given protein surface. - Agnieszka Obarska-Kosinska; Alfredo Iacoangeli; Rosalba Lepore; Anna Tramontano (Nucleic Acids Res., 2016)

PIGSPro: prediction of immunoGlobulin structures v2. - Rosalba Lepore; Pier Paolo Olimpieri; Mario Abdel Messih; Anna Tramontano (Nucleic Acids Res., 2017)