OSPREY 3.0: Open-source protein redesign for you, with powerful new features. - Mark A. Hallen; Jeffrey W. Martin; Adegoke A. Ojewole; Jonathan D. Jou; Anna U. Lowegard; Marcel S. Frenkel; Pablo Gainza; Hunter M. Nisonoff; Aditya Mukund; Siyu Wang; Graham T. Holt; David Zhou; et al. (J. Comput. Chem., 2018)

Minimization-Aware Recursive K^* K ∗ ( MARK^* MARK ∗ ): A Novel, Provable Algorithm that Accelerates Ensemble-Based Protein Design and Provably Approximates the Energy Landscape. - Jonathan D. Jou; Graham T. Holt; Anna U. Lowegard; Bruce Randall Donald (RECOMB, 2019)

Minimization-Aware Recursive K*: A Novel, Provable Algorithm that Accelerates Ensemble-Based Protein Design and Provably Approximates the Energy Landscape. - Jonathan D. Jou; Graham T. Holt; Anna U. Lowegard; Bruce Randall Donald (J. Comput. Biol., 2020)

Novel, provable algorithms for efficient ensemble-based computational protein design and their application to the redesign of the c-Raf-RBD: KRas protein-protein interface. - Anna U. Lowegard; Marcel S. Frenkel; Graham T. Holt; Jonathan D. Jou; Adegoke A. Ojewole; Bruce Randall Donald (PLoS Comput. Biol., 2020)

Early computational detection of potential high-risk SARS-CoV-2 variants. - Karim Beguir; Marcin J. Skwark; Yunguan Fu; Thomas Pierrot; Nicolás López Carranza; Alexandre Laterre; Ibtissem Kadri; Abir Korched; Anna U. Lowegard; Bonny Gaby Lui; Bianca Sänger; Yunpeng Liu; et al. (Comput. Biol. Medicine, 2023)