COCOMAPS: a web application to analyze and visualize contacts at the interface of biomolecular complexes. - Anna Vangone; Raffaele Spinelli; Vittorio Scarano; Luigi Cavallo; Romina Oliva (Bioinform., 2011)

CONS-COCOMAPS: a novel tool to measure and visualize the conservation of inter-residue contacts in multiple docking solutions. - Anna Vangone; Romina Oliva; Luigi Cavallo (BMC Bioinform., 2012)

MDcons: Intermolecular contact maps as a tool to analyze the interface of protein complexes from molecular dynamics trajectories. - Safwat Abdel-Azeim; Edrisse Chermak; Anna Vangone; Romina Oliva; Luigi Cavallo (BMC Bioinform., 2014)

CONSRANK: a server for the analysis, comparison and ranking of docking models based on inter-residue contacts. - Edrisse Chermak; Andrea Petta; Luigi Serra; Anna Vangone; Vittorio Scarano; Luigi Cavallo; Romina Oliva (Bioinform., 2015)

PRODIGY: a web server for predicting the binding affinity of protein-protein complexes. - Li C. Xue; João P. G. L. M. Rodrigues; Panagiotis L. Kastritis; Alexandre M. J. J. Bonvin; Anna Vangone (Bioinform., 2016)

Performance of HADDOCK and a simple contact-based protein-ligand binding affinity predictor in the D3R Grand Challenge 2. - Zeynep Kurkcuoglu; Panagiotis I. Koukos; Nevia Citro; Mikael E. Trellet; João P. G. L. M. Rodrigues; Irina S. Moreira; Jorge Roel-Touris; Adrien S. J. Melquiond; Cunliang Geng; Jörg Schaarschmidt; Li C. Xue; Anna Vangone; et al. (J. Comput. Aided Mol. Des., 2018)

PRODIGY-crystal: a web-tool for classification of biological interfaces in protein complexes. - Brian Jiménez-García; Katarina Elez; Panagiotis I. Koukos; Alexandre M. J. J. Bonvin; Anna Vangone (Bioinform., 2019)

Large-scale prediction of binding affinity in protein-small ligand complexes: the PRODIGY-LIG web server. - Anna Vangone; Jörg Schaarschmidt; Panagiotis I. Koukos; Cunliang Geng; Nevia Citro; Mikael E. Trellet; Li C. Xue; Alexandre M. J. J. Bonvin (Bioinform., 2019)

Co-evolutionary distance predictions contain flexibility information. - Dominik Schwarz; Guy Georges; Sebastian Kelm; Jiye Shi; Anna Vangone; Charlotte M. Deane (Bioinform., 2021)