Modeling sample variables with an Experimental Factor Ontology. - James Malone; Ele Holloway; Tomasz Adamusiak; Misha Kapushesky; Jie Zheng 001; Nikolay Kolesnikov; Anna Zhukova; Alvis Brazma; Helen E. Parkinson (Bioinform., 2010)

Knowledge-based generalization of metabolic networks: A practical study. - Anna Zhukova; David James Sherman (J. Bioinform. Comput. Biol., 2014)

Knowledge-based Generalization of Metabolic Models. - Anna Zhukova; David James Sherman (J. Comput. Biol., 2014)

Knowledge-based scaling for biological models. (Généralisation de modèles métaboliques par connaissances). - Anna Zhukova (2014)

Mimoza: web-based semantic zooming and navigation in metabolic networks. - Anna Zhukova; David James Sherman (BMC Syst. Biol., 2015)

Pantograph: A template-based method for genome-scale metabolic model reconstruction. - Nicolás Loira; Anna Zhukova; David James Sherman (J. Bioinform. Comput. Biol., 2015)

Toward Community Standards and Software for Whole-Cell Modeling. - Dagmar Waltemath; Jonathan R. Karr; Frank T. Bergmann; Vijayalakshmi Chelliah; Michael Hucka; Marcus Krantz; Wolfram Liebermeister; Pedro Mendes 001; Chris J. Myers; Pinar Pir; Begum Alaybeyoglu; Naveen K. Aranganathan; et al. (IEEE Trans. Biomed. Eng., 2016)

Hedonic Pricing on the Fine Art Market. - Anna Zhukova; Valeriya Lakshina; Liudmila Leonova (Inf., 2020)

BioSimulators: a central registry of simulation engines and services for recommending specific tools. - Bilal Shaikh; Lucian P. Smith; Dan Vasilescu; Gnaneswara Marupilla; Michael Wilson; Eran Agmon; Henry Agnew; Steven S. Andrews; Azraf Anwar; Moritz E. Beber; Frank T. Bergmann; David Brooks 006; et al. (CoRR, 2022)

BioSimulators: a central registry of simulation engines and services for recommending specific tools. - Bilal Shaikh; Lucian P. Smith; Dan Vasilescu; Gnaneswara Marupilla; Michael Wilson; Eran Agmon; Henry Agnew; Steven S. Andrews; Azraf Anwar; Moritz E. Beber; Frank T. Bergmann; David Brooks 006; et al. (Nucleic Acids Res., 2022)