rBiopaxParser - an R package to parse, modify and visualize BioPAX data. - Frank Kramer 001; Michaela Bayerlová; Florian Klemm; Annalen Bleckmann; Tim Beißbarth (Bioinform., 2013)

Comparative study on gene set and pathway topology-based enrichment methods. - Michaela Bayerlová; Klaus Jung; Frank Kramer 001; Florian Klemm; Annalen Bleckmann; Tim Beißbarth (BMC Bioinform., 2015)

Using RNA-Seq Data for the Detection of a Panel of Clinically Relevant Mutations. - Alexander Wolff 002; Júlia Perera-Bel; Hans-Ulrich Schildhaus; Kia Homayounfar; Bawarjan Schatlo; Annalen Bleckmann; Tim Beißbarth (GMDS, 2018)

Utilizing Molecular Network Information via Graph Convolutional Neural Networks to Predict Metastatic Event in Breast Cancer. - Hryhorii Chereda; Annalen Bleckmann; Frank Kramer 001; Andreas Leha; Tim Beißbarth (GMDS, 2019)

Reconstruction of Different Modes of WNT Dependent Protein Networks from Time Series Protein Quantification. - Maren Sitte; Kerstin Menck; Astrid Wachter; Eileen Reinz; Ulrike Korf; Stefan Wiemann; Annalen Bleckmann; Tim Beißbarth (GMDS, 2019)