OnACID: Online Analysis of Calcium Imaging Data in Real Time. - Andrea Giovannucci; Johannes Friedrich; Matthew T. Kaufman; Anne Churchland; Dmitri B. Chklovskii; Liam Paninski; Eftychios A. Pnevmatikakis (NIPS, 2017)

BehaveNet: nonlinear embedding and Bayesian neural decoding of behavioral videos. - Eleanor Batty; Matthew R. Whiteway; Shreya Saxena; Dan Biderman; Taiga Abe; Simon Musall; Winthrop Gillis; Jeffrey E. Markowitz; Anne Churchland; John P. Cunningham; Sandeep R. Datta; Scott W. Linderman; et al. (NeurIPS, 2019)

Localized semi-nonnegative matrix factorization (LocaNMF) of widefield calcium imaging data. - Shreya Saxena; Ian Kinsella; Simon Musall; Sharon H. Kim; Jozsef Meszaros; David N. Thibodeaux; Carla Kim; John J. Cunningham; Elizabeth M. C. Hillman; Anne Churchland; Liam Paninski (PLoS Comput. Biol., 2020)

Decentralized Motion Inference and Registration of Neuropixel Data. - Erdem Varol; Julien Boussard; Nishchal Dethe; Olivier Winter; Anne E. Urai; International Brain Laboratory; Anne Churchland; Nick Steinmetz; Liam Paninski (ICASSP, 2021)

Natural and Artificial Intelligence: A brief introduction to the interplay between AI and neuroscience research. - Tom Macpherson; Anne Churchland; Terry Sejnowski; James DiCarlo; Yukiyasu Kamitani; Hidehiko Takahashi; Takatoshi Hikida (Neural Networks, 2021)

Toward Next-Generation Artificial Intelligence: Catalyzing the NeuroAI Revolution. - Anthony Zador; Blake A. Richards; Bence Ölveczky; Sean Escola; Yoshua Bengio; Kwabena Boahen 001; Matthew M. Botvinick; Dmitri B. Chklovskii; Anne Churchland; Claudia Clopath; James DiCarlo; Surya Ganguli; et al. (CoRR, 2022)

Shared-AE: Automatic Identification of Shared Subspaces in High-dimensional Neural and Behavioral Activity. - Daiyao Yi; Hao Dong; Michael James Higley; Anne Churchland; Shreya Saxena (ICLR, 2025)