Temporal Variability and Social Heterogeneity in Disease Transmission: The Case of SARS in Hong Kong. - Anne Cori; Pierre-Yves Boëlle; Guy Thomas; Gabriel M. Leung; Alain-Jacques Valleron (PLoS Comput. Biol., 2009)

Bayesian Reconstruction of Disease Outbreaks by Combining Epidemiologic and Genomic Data. - Thibaut Jombart; Anne Cori; Xavier Didelot; Simon Cauchemez; Christophe Fraser; Neil M. Ferguson (PLoS Comput. Biol., 2014)

outbreaker2: a modular platform for outbreak reconstruction. - Finlay Campbell; Xavier Didelot; Richard G. FitzJohn; Neil M. Ferguson; Anne Cori; Thibaut Jombart (BMC Bioinform., 2018)

A graph-based evidence synthesis approach to detecting outbreak clusters: An application to dog rabies. - Anne Cori; Pierre Nouvellet; Tini Garske; Hervé Bourhy; Emmanuel Nakouné; Thibaut Jombart (PLoS Comput. Biol., 2018)

Bayesian inference of transmission chains using timing of symptoms, pathogen genomes and contact data. - Finlay Campbell; Anne Cori; Neil M. Ferguson; Thibaut Jombart (PLoS Comput. Biol., 2019)

Using digital surveillance tools for near real-time mapping of the risk of infectious disease spread. - Sangeeta Bhatia; Britta Lassmann; Emily Cohn; Angel N. Desai; Malwina Carrion; Moritz U. G. Kraemer; Mark Herringer; John S. Brownstein; Lawrence C. Madoff; Anne Cori; Pierre Nouvellet (npj Digit. Medicine, 2021)

PopART-IBM, a highly efficient stochastic individual-based simulation model of generalised HIV epidemics developed in the context of the HPTN 071 (PopART) trial. - Michael Pickles; Anne Cori; William J. M. Probert; Rafael Sauter; Robert Hinch; Sarah Fidler; Helen Ayles; Peter Bock; Deborah Donnell; Ethan Wilson; Estelle Piwowar-Manning; Sian Floyd; et al. (PLoS Comput. Biol., 2021)

Comparing human and model-based forecasts of COVID-19 in Germany and Poland. - Nikos I. Bosse; Sam Abbott; Johannes Bracher; Habakuk Hain; Billy J. Quilty; Mark Jit; Edwin van Leeuwen; Anne Cori; Sebastian Funk (PLoS Comput. Biol., 2022)

Scoring epidemiological forecasts on transformed scales. - Nikos I. Bosse; Sam Abbott; Anne Cori; Edwin van Leeuwen; Johannes Bracher; Sebastian Funk (PLoS Comput. Biol., 2023)

Estimating the epidemic reproduction number from temporally aggregated incidence data: A statistical modelling approach and software tool. - Rebecca K. Nash; Samir Bhatt; Anne Cori; Pierre Nouvellet (PLoS Comput. Biol., 2023)

Best practices for estimating and reporting epidemiological delay distributions of infectious diseases. - Kelly Charniga; Sang Woo Park; Andrei R. Akhmetzhanov; Anne Cori; Jonathan Dushoff; Sebastian Funk; Katelyn M. Gostic; Natalie M. Linton; Adrian Lison; Christopher E. Overton; Juliet R. C. Pulliam; Thomas Ward; et al. (PLoS Comput. Biol., 2024)

The impact of health inequity on spatial variation of COVID-19 transmission in England. - Thomas Rawson; Wes Hinsley; Raphael Sonabend; Elizaveta Semenova; Anne Cori; Neil M. Ferguson (PLoS Comput. Biol., 2024)