Ecosystems Monitoring: An Information Extraction and Event Processing Scientific Workflow. - Ahmed Abdeen Hamed; Byung Suk Lee 001; Anne E. Thessen (SERVICES, 2010)

Applications of Natural Language Processing in Biodiversity Science. - Anne E. Thessen; Hong Cui; Dmitry Mozzherin (Adv. Bioinformatics, 2012)

The user's view on biodiversity data sharing - Investigating facts of acceptance and requirements to realize a sustainable use of research data -. - Neela Enke; Anne E. Thessen; Kerstin Bach; Jörg Bendix; Bernhard Seeger; Birgit Gemeinholzer (Ecol. Informatics, 2012)

Data Conservancy Provenance, Context, and Lineage Services: Key Components for Data Preservation and Curation. - Matthew S. Mayernik; Tim DiLauro; Ruth E. Duerr; Elliot Metsger; Anne E. Thessen; G. Sayeed Choudhury (Data Sci. J., 2013)

Semantic Web and Big Data meets Applied Ontology - The Ontology Summit 2014. - Leo Obrst; Michael Grüninger; Ken Baclawski; Mike Bennett; Dan Brickley; Gary Berg-Cross; Pascal Hitzler; Krzysztof Janowicz; Christine Kapp; Oliver Kutz; Christoph Lange 002; Anatoly Levenchuk; et al. (Appl. Ontology, 2014)

Lessons learned while building the Deepwater Horizon Database: Toward improved data sharing in coastal science. - Anne E. Thessen; Sean McGinnis; Elizabeth W. North (Comput. Geosci., 2016)

20 GB in 10 minutes: A case for linking major biodiversity databases using an open socio-technical infrastructure and a pragmatic, cross-institutional collaboration. - Anne E. Thessen; Jorrit H. Poelen; Matthew Collins; Jen Hammock (PeerJ Prepr., 2018)

Application of Semantic Technology in Biodiversity Science: An Introduction. - Anne E. Thessen (Application of Semantic Technology in Biodiversity Science, 2018)

Proper Attribution for Curation and Maintenance of Research Collections: Metadata Recommendations of the RDA/TDWG Working Group. - Anne E. Thessen; Matt Woodburn; Dimitrios Koureas; Deborah Paul; Michael Conlon 001; David P. Shorthouse; Sarah Ramdeen (Data Sci. J., 2019)

People are essential to linking biodiversity data. - Quentin Groom; Anton Güntsch; Pieter Huybrechts; Nicole Kearney; Siobhan Leachman; Nicky Nicolson; Roderic D. M. Page; David P. Shorthouse; Anne E. Thessen; Elspeth Haston (Database J. Biol. Databases Curation, 2020)

The Monarch Initiative in 2019: an integrative data and analytic platform connecting phenotypes to genotypes across species. - Kent A. Shefchek; Nomi L. Harris; Michael A. Gargano; Nicolas Matentzoglu; Deepak R. Unni; Matthew H. Brush; Dan Keith; Tom Conlin; Nicole A. Vasilevsky; Xingmin Aaron Zhang; James P. Balhoff; Larry Babb; et al. (Nucleic Acids Res., 2020)

Transforming the study of organisms: Phenomic data models and knowledge bases. - Anne E. Thessen; Ramona L. Walls; Lars Vogt; Jessica Singer; Robert Warren; Pier Luigi Buttigieg; James P. Balhoff; Christopher J. Mungall; Deborah L. McGuinness; Brian J. Stucky; Matthew J. Yoder; Melissa A. Haendel (PLoS Comput. Biol., 2020)

A Semantic Model Leveraging Pattern-based Ontology Terms to Bridge Environmental Exposures and Health Outcomes. - Lauren E. Chan; Nicole A. Vasilevsky; Anne E. Thessen; Nicolas Matentzoglu; William D. Duncan; Christopher J. Mungall; Melissa A. Haendel (ICBO, 2021)

KG-Microbe: A Reference Knowledge-Graph and Platform for Harmonized Microbial Information. - Marcin P. Joachimiak; Harshad Hegde; William D. Duncan; Justin T. Reese; Luca Cappelletti; Anne E. Thessen; Christopher J. Mungall (ICBO, 2021)

The landscape of nutri-informatics: a review of current resources and challenges for integrative nutrition research. - Lauren E. Chan; Nicole A. Vasilevsky; Anne E. Thessen; Julie A. McMurry; Melissa A. Haendel (Database J. Biol. Databases Curation, 2021)

From Survey to Ontology, the Challenges and Opportunities in Ontologizing Questions and Answers. - Lauren E. Chan; Jimmy Phuong; Anne E. Thessen; Stephanie S. Hong; Shahim Essaid; Melissa A. Haendel (ICBO, 2022)

Environmental Health Language Collaborative (EHLC): a Route to Environmental Health Science Data Harmonization. - Anna Maria Masci; Stephanie Holmgren; Charles Schmitt; Rima Habre; Anne E. Thessen; Rebecca Boyles; Carmen J. Marsit (ICBO, 2022)

A Simple Standard for Sharing Ontological Mappings (SSSOM). - Nicolas Matentzoglu; James P. Balhoff; Susan M. Bello; Chris Bizon; Matthew H. Brush; Tiffany J. Callahan; Christopher G. Chute; William D. Duncan; Chris T. A. Evelo; Davera Gabriel; John B. Graybeal; Alasdair J. G. Gray; et al. (Database J. Biol. Databases Curation, 2022)

Biolink Model: A Universal Schema for Knowledge Graphs in Clinical, Biomedical, and Translational Science. - Deepak R. Unni; Sierra A. T. Moxon; Michael Bada; Matthew H. Brush; Richard M. Bruskiewich; Paul A. Clemons; Vlado Dancík; Michel Dumontier; Karamarie Fecho; Gustavo Glusman; Jennifer J. Hadlock; Nomi L. Harris; et al. (CoRR, 2022)

Data sharing and ontology use among agricultural genetics, genomics, and breeding databases and resources of the Agbiodata Consortium. - Jennifer L. Clarke; Laurel D. Cooper; Monica F. Poelchau; Tanya Z. Berardini; Justin Elser; Andrew D. Farmer; Stephen P. Ficklin; Sunita Kumari; Marie-Angélique Laporte; Rex T. Nelson; Rie Sadohara; Peter Selby; et al. (Database J. Biol. Databases Curation, 2023)

KG-Hub - Building and Exchanging Biological Knowledge Graphs. - J. Harry Caufield; Tim E. Putman; Kevin Schaper; Deepak R. Unni; Harshad Hegde; Tiffany J. Callahan; Luca Cappelletti; Sierra A. T. Moxon; Vida Ravanmehr; Seth Carbon; Lauren E. Chan; Katherina Cortes; et al. (CoRR, 2023)

Using knowledge graphs to infer gene expression in plants. - Anne E. Thessen; Laurel Cooper; Tyson L. Swetnam; Harshad Hegde; Justin T. Reese; Justin Elser; Pankaj Jaiswal (Frontiers Artif. Intell., 2023)

The Environmental Conditions, Treatments, and Exposures Ontology (ECTO): connecting toxicology and exposure to human health and beyond. - Lauren E. Chan; Anne E. Thessen; William D. Duncan; Nicolas Matentzoglu; Charles Schmitt; Cynthia J. Grondin; Nicole A. Vasilevsky; Julie A. McMurry; Peter N. Robinson; Christopher J. Mungall; Melissa A. Haendel (J. Biomed. Semant., 2023)

A Dynamic Framework for Semantic Grouping of Common Data Elements (CDE) Using Embeddings and Clustering. - Madan Krishnamurthy; Daniel R. Korn; Melissa A. Haendel; Christopher J. Mungall; Anne E. Thessen (CoRR, 2025)