A jumping profile Hidden Markov Model and applications to recombination sites in HIV and HCV genomes. - Anne-Kathrin Schultz; Ming Zhang; Thomas Leitner; Carla Kuiken; Bette T. Korber; Burkhard Morgenstern; Mario Stanke (BMC Bioinform., 2006)

jpHMM at GOBICS: a web server to detect genomic recombinations in HIV-1. - Ming Zhang; Anne-Kathrin Schultz; Charles Calef; Carla Kuiken; Thomas Leitner; Bette T. Korber; Burkhard Morgenstern; Mario Stanke (Nucleic Acids Res., 2006)

jpHMM: Improving the reliability of recombination prediction in HIV-1. - Anne-Kathrin Schultz; Ming Zhang; Ingo Bulla; Thomas Leitner; Bette T. Korber; Burkhard Morgenstern; Mario Stanke (Nucleic Acids Res., 2009)

HIV classification using the coalescent theory. - Ingo Bulla; Anne-Kathrin Schultz; Fabian Schreiber; Ming Zhang; Thomas Leitner; Bette T. Korber; Burkhard Morgenstern; Mario Stanke (Bioinform., 2010)

Detection of viral sequence fragments of HIV-1 subfamilies yet unknown. - Thomas Unterthiner; Anne-Kathrin Schultz; Jan Bulla; Burkhard Morgenstern; Mario Stanke; Ingo Bulla (BMC Bioinform., 2011)

Improvement of the jpHMM approach to recombination detection in viral genomes and its application to HIV and HBV. - Anne-Kathrin Schultz (2011)

jpHMM: recombination analysis in viruses with circular genomes such as the hepatitis B virus. - Anne-Kathrin Schultz; Ingo Bulla; Mariama Abdou-Chekaraou; Emmanuel Gordien; Burkhard Morgenstern; Fabien Zoulim; Paul Dény; Mario Stanke (Nucleic Acids Res., 2012)

A model-based information sharing protocol for profile Hidden Markov Models used for HIV-1 recombination detection. - Ingo Bulla; Anne-Kathrin Schultz; Christophe Chesneau; Tanya Mark; Florin Serea (BMC Bioinform., 2014)