Testing the Coulomb/Accessible Surface Area solvent model for protein stability, ligand binding, and protein design. - Marcel Schmidt am Busch; Anne Lopes; Najette Amara; Christine Bathelt; Thomas Simonson (BMC Bioinform., 2008)

Computational protein design: Software implementation, parameter optimization, and performance of a simple model. - Marcel Schmidt am Busch; Anne Lopes; David Mignon; Thomas Simonson (J. Comput. Chem., 2008)

Computational design of protein-ligand binding: Modifying the specificity of asparaginyl-tRNA synthetase. - Anne Lopes; Marcel Schmidt am Busch; Thomas Simonson (J. Comput. Chem., 2010)

Computational protein design: The proteus software and selected applications. - Thomas Simonson; Thomas Gaillard; David Mignon; Marcel Schmidt am Busch; Anne Lopes; Najette Amara; Savvas Polydorides; Audrey Sedano; Karen Druart; Georgios Archontis (J. Comput. Chem., 2013)

Protein-Protein Interactions in a Crowded Environment: An Analysis via Cross-Docking Simulations and Evolutionary Information. - Anne Lopes; Sophie Sacquin-Mora; Viktoriya Dimitrova; Elodie Laine; Yann Ponty; Alessandra Carbone (PLoS Comput. Biol., 2013)

Meet-U: Educating through research immersion. - Nika Abdollahi; Alexandre Albani; Éric Anthony; Agnes Baud; Mélissa Cardon; Robert Clerc; Dariusz Czernecki; Romain Conte; Laurent David; Agathe Delaune; Samia Djerroud; Pauline Fourgoux; et al. (PLoS Comput. Biol., 2018)

SURFMAP: A Software for Mapping in Two Dimensions Protein Surface Features. - Hugo Schweke; Marie-Hélène Mucchielli; Nicolas Chevrollier; Simon Gosset; Anne Lopes (J. Chem. Inf. Model., 2022)