DAPAR & ProStaR: software to perform statistical analyses in quantitative discovery proteomics. - Samuel Wieczorek; Florence Combes; Cosmin Lazar; Quentin Giai Gianetto; Laurent Gatto; Alexia Dorffer; Anne-Marie Hesse; Yohann Couté; Myriam Ferro; Christophe Bruley; Thomas Burger (Bioinform., 2017)

Proline: an efficient and user-friendly software suite for large-scale proteomics. - David Bouyssié; Anne-Marie Hesse; Emmanuelle Mouton-Barbosa; Magali Rompais; Charlotte Macron; Christine Carapito; Anne Gonzalez de Peredo; Yohann Couté; Véronique Dupierris; Alexandre Burel; Jean-Philippe Menetrey; Andrea Kalaitzakis; et al. (Bioinform., 2020)

Well Plate Maker: a user-friendly randomized block design application to limit batch effects in large-scale biomedical studies. - Hélène Borges; Anne-Marie Hesse; Alexandra Kraut; Yohann Couté; Virginie Brun; Thomas Burger (Bioinform., 2021)

CHICKN: extraction of peptide chromatographic elution profiles from large scale mass spectrometry data by means of Wasserstein compressive hierarchical cluster analysis. - Olga Permiakova; Romain Guibert; Alexandra Kraut; Thomas Fortin; Anne-Marie Hesse; Thomas Burger (BMC Bioinform., 2021)