Syntons, metabolons and interactons: an exact graph-theoretical approach for exploring neighbourhood between genomic and functional data. - Frédéric Boyer; Anne Morgat; Laurent Labarre; Joël Pothier; Alain Viari (Bioinform., 2005)

Rhea - a manually curated resource of biochemical reactions. - Rafael Alcántara; Kristian B. Axelsen; Anne Morgat; Eugeni Belda; Elisabeth Coudert; Alan J. Bridge; Hong Cao; Paula de Matos; Marcus Ennis; Steve Turner; Gareth I. Owen; Lydie Bougueleret; et al. (Nucleic Acids Res., 2012)

UniPathway: a resource for the exploration and annotation of metabolic pathways. - Anne Morgat; Eric Coissac; Elisabeth Coudert; Kristian B. Axelsen; Guillaume Keller; Amos Bairoch; Alan J. Bridge; Lydie Bougueleret; Ioannis Xenarios; Alain Viari (Nucleic Acids Res., 2012)

Reconciliation of metabolites and biochemical reactions for metabolic networks. - Thomas Bernard; Alan J. Bridge; Anne Morgat; Sébastien Moretti; Ioannis Xenarios; Marco Pagni (Briefings Bioinform., 2014)

Updates in Rhea - a manually curated resource of biochemical reactions. - Anne Morgat; Kristian B. Axelsen; Thierry Lombardot; Rafael Alcántara; Lucila Aimo; Mohamed Zerara; Anne Niknejad; Eugeni Belda; Nevila Hyka-Nouspikel; Elisabeth Coudert; Nicole Redaschi; Lydie Bougueleret; et al. (Nucleic Acids Res., 2015)

MetaNetX/MNXref - reconciliation of metabolites and biochemical reactions to bring together genome-scale metabolic networks. - Sébastien Moretti; Olivier Martin 002; T. Van Du Tran; Alan J. Bridge; Anne Morgat; Marco Pagni (Nucleic Acids Res., 2016)

Updates in Rhea - an expert curated resource of biochemical reactions. - Anne Morgat; Thierry Lombardot; Kristian B. Axelsen; Lucila Aimo; Anne Niknejad; Nevila Hyka-Nouspikel; Elisabeth Coudert; Monica Pozzato; Marco Pagni; Sébastien Moretti; Steven Rosanoff; Joseph Onwubiko; et al. (Nucleic Acids Res., 2017)

Updates in Rhea: SPARQLing biochemical reaction data. - Thierry Lombardot; Anne Morgat; Kristian B. Axelsen; Lucila Aimo; Nevila Hyka-Nouspikel; Anne Niknejad; Alexandr Ignatchenko; Ioannis Xenarios; Elisabeth Coudert; Nicole Redaschi; Alan J. Bridge (Nucleic Acids Res., 2019)

Enzyme annotation in UniProtKB using Rhea. - Anne Morgat; Thierry Lombardot; Elisabeth Coudert; Kristian B. Axelsen; Teresa Batista Neto; Sebastien Gehant; Parit Bansal; Jerven T. Bolleman; Elisabeth Gasteiger; Edouard De Castro; Delphine Baratin; Monica Pozzato; et al. (Bioinform., 2020)

UniProt: the universal protein knowledgebase in 2021. - Alex Bateman; Maria Jesus Martin; Sandra E. Orchard; Michele Magrane; Rahat Agivetova; Shadab Ahmad; Emanuele Alpi; Emily H. Bowler-Barnett; Ramona Britto; Borisas Bursteinas; Hema Bye-A-Jee; Ray Coetzee; et al. (Nucleic Acids Res., 2021)

The Gene Ontology resource: enriching a GOld mine. - Seth Carbon; Eric Douglass; Benjamin M. Good; Deepak R. Unni; Nomi L. Harris; Christopher J. Mungall; Siddartha Basu; Rex L. Chisholm; Robert J. Dodson; Eric Hartline; Petra Fey; Paul D. Thomas; et al. (Nucleic Acids Res., 2021)

A roadmap for the functional annotation of protein families: a community perspective. - Valérie de Crécy-Lagard; Rocio Amorin de Hegedus; Cecilia N. Arighi; Jill Babor; Alex Bateman; Ian Blaby; Crysten Blaby-Haas; Alan J. Bridge; Stephen K. Burley; Stacey Cleveland; Lucy J. Colwell; Ana Conesa; et al. (Database J. Biol. Databases Curation, 2022)

Rhea, the reaction knowledgebase in 2022. - Parit Bansal; Anne Morgat; Kristian B. Axelsen; Venkatesh Muthukrishnan; Elisabeth Coudert; Lucila Aimo; Nevila Hyka-Nouspikel; Elisabeth Gasteiger; Arnaud Kerhornou; Teresa Batista Neto; Monica Pozzato; Marie-Claude Blatter; et al. (Nucleic Acids Res., 2022)

UniProt, ChEBI and IDSM Sachem: exploring biologically relevant ligands. - Sebastien Gehant; Elisabeth Coudert; Anne Morgat; Jerven T. Bolleman; Nicole Redaschi; Alan J. Bridge; UniProt Consortium (SWAT4HCLS, 2023)

Annotation of biologically relevant ligands in UniProtKB using ChEBI. - Elisabeth Coudert; Sebastien Gehant; Edouard De Castro; Monica Pozzato; Delphine Baratin; Teresa Batista Neto; Christian J. A. Sigrist; Nicole Redaschi; Alan J. Bridge; Lucila Aimo; Ghislaine Argoud-Puy; Andrea H. Auchincloss; et al. (Bioinform., 2023)

EnzChemRED, a rich enzyme chemistry relation extraction dataset. - Po-Ting Lai; Elisabeth Coudert; Lucila Aimo; Kristian B. Axelsen; Lionel Breuza; Edouard De Castro; Marc Feuermann; Anne Morgat; Lucille Pourcel; Ivo Pedruzzi; Sylvain Poux; Nicole Redaschi; et al. (CoRR, 2024)

A large collection of bioinformatics question-query pairs over federated knowledge graphs: methodology and applications. - Jerven T. Bolleman; Vincent Emonet; Adrian M. Altenhoff; Amos Bairoch; Marie-Claude Blatter; Alan J. Bridge; Severine Duvaud; Elisabeth Gasteiger; Dmitry Kuznetsov; Sébastien Moretti; Pierre-André Michel; Anne Morgat; et al. (CoRR, 2024)

EnzChemRED, a rich enzyme chemistry relation extraction dataset. - Po-Ting Lai; Elisabeth Coudert; Lucila Aimo; Kristian B. Axelsen; Lionel Breuza; Edouard De Castro; Marc Feuermann; Anne Morgat; Lucille Pourcel; Ivo Pedruzzi; Sylvain Poux; Nicole Redaschi; et al. (Zenodo, 2024)