vHOG, a multispecies vertebrate ontology of homologous organs groups. - Anne Niknejad; Aurélie Comte; Gilles Parmentier; Julien Roux; Frederic B. Bastian; Marc Robinson-Rechavi (Bioinform., 2012)

Uncovering hidden duplicated content in public transcriptomics data. - Marta Rosikiewicz; Aurélie Comte; Anne Niknejad; Marc Robinson-Rechavi; Frederic B. Bastian (Database J. Biol. Databases Curation, 2013)

Unification of multi-species vertebrate anatomy ontologies for comparative biology in Uberon. - Melissa A. Haendel; James P. Balhoff; Frederic B. Bastian; David C. Blackburn; Judith A. Blake; Yvonne M. Bradford; Aurélie Comte; Wasila M. Dahdul; Thomas Dececchi; Robert E. Druzinsky; Terry F. Hayamizu; Nizar Ibrahim; et al. (J. Biomed. Semant., 2014)

The Confidence Information Ontology: a step towards a standard for asserting confidence in annotations. - Frederic B. Bastian; Marcus C. Chibucos; Pascale Gaudet; Michelle G. Giglio; Gemma L. Holliday; Hong Huang; Suzanna E. Lewis; Anne Niknejad; Sandra E. Orchard; Sylvain Poux; Nives Skunca; Marc Robinson-Rechavi (Database J. Biol. Databases Curation, 2015)

The SwissLipids knowledgebase for lipid biology. - Lucila Aimo; Robin Liechti; Nevila Hyka-Nouspikel; Anne Niknejad; Anne Gleizes; Lou Götz; Dmitry Kuznetsov; Fabrice P. A. David; F. Gisou van der Goot; Howard Riezman; Lydie Bougueleret; Ioannis Xenarios; et al. (Bioinform., 2015)

Updates in Rhea - a manually curated resource of biochemical reactions. - Anne Morgat; Kristian B. Axelsen; Thierry Lombardot; Rafael Alcántara; Lucila Aimo; Mohamed Zerara; Anne Niknejad; Eugeni Belda; Nevila Hyka-Nouspikel; Elisabeth Coudert; Nicole Redaschi; Lydie Bougueleret; et al. (Nucleic Acids Res., 2015)

Boolean regulatory network reconstruction using literature based knowledge with a genetic algorithm optimization method. - Julien Dorier; Isaac Crespo; Anne Niknejad; Robin Liechti; Martin Ebeling; Ioannis Xenarios (BMC Bioinform., 2016)

Updates in Rhea - an expert curated resource of biochemical reactions. - Anne Morgat; Thierry Lombardot; Kristian B. Axelsen; Lucila Aimo; Anne Niknejad; Nevila Hyka-Nouspikel; Elisabeth Coudert; Monica Pozzato; Marco Pagni; Sébastien Moretti; Steven Rosanoff; Joseph Onwubiko; et al. (Nucleic Acids Res., 2017)

Expert curation for building network-based dynamical models: a case study on atherosclerotic plaque formation. - Amel Bekkar; Anne Estreicher; Anne Niknejad; Cristina Casals-Casas; Alan J. Bridge; Ioannis Xenarios; Julien Dorier; Isaac Crespo (Database J. Biol. Databases Curation, 2018)

Updates in Rhea: SPARQLing biochemical reaction data. - Thierry Lombardot; Anne Morgat; Kristian B. Axelsen; Lucila Aimo; Nevila Hyka-Nouspikel; Anne Niknejad; Alexandr Ignatchenko; Ioannis Xenarios; Elisabeth Coudert; Nicole Redaschi; Alan J. Bridge (Nucleic Acids Res., 2019)

The Minimum Information about a Molecular Interaction CAusal STatement (MI2CAST). - Vasundra Touré; Steven Vercruysse; Marcio Luis Acencio; Ruth C. Lovering; Sandra E. Orchard; Glyn Bradley; Cristina Casals-Casas; Claudine Chaouiya; Noemi del-Toro; Åsmund Flobak; Pascale Gaudet; Henning Hermjakob; et al. (Bioinform., 2021)

The Bgee suite: integrated curated expression atlas and comparative transcriptomics in animals. - Frederic B. Bastian; Julien Roux; Anne Niknejad; Aurélie Comte; Sara S. Fonseca Costa; Tarcisio Mendes de Farias; Sébastien Moretti; Gilles Parmentier; Valentine Rech de Laval; Marta Rosikiewicz; Julien Wollbrett; Amina Echchiki; et al. (Nucleic Acids Res., 2021)