Macroscopic modelling of baker's yeast production in fed-batch cultures and its link with trehalose production. - Anne Richelle; Patrick Fickers; Philippe Bogaerts (Comput. Chem. Eng., 2014)

Increasing consensus of context-specific metabolic models by integrating data-inferred cell functions. - Anne Richelle; Austin W. T. Chiang; Chih-Chung Kuo; Nathan E. Lewis (PLoS Comput. Biol., 2019)

Assessing key decisions for transcriptomic data integration in biochemical networks. - Anne Richelle; Chintan J. Joshi; Nathan E. Lewis (PLoS Comput. Biol., 2019)

StanDep: Capturing transcriptomic variability improves context-specific metabolic models. - Chintan J. Joshi; Song-Min Schinn; Anne Richelle; Isaac Shamie; Eyleen J. O'Rourke; Nathan E. Lewis (PLoS Comput. Biol., 2020)

Correction: StanDep: Capturing transcriptomic variability improves context-specific metabolic models. - Chintan J. Joshi; Song-Min Schinn; Anne Richelle; Isaac Shamie; Eyleen J. O'Rourke; Nathan E. Lewis (PLoS Comput. Biol., 2022)

A robust batch-to-batch optimization framework for pharmaceutical applications. - Ali Ghodba; Anne Richelle; Chris McCready; Luis A. Ricardez-Sandoval; Hector M. Budman (Comput. Chem. Eng., 2025)