Geometry of rank tests. - Jason Morton; Lior Pachter; Anne Shiu; Bernd Sturmfels; Oliver Wienand (Probabilistic Graphical Models, 2006)

The Smallest Multistationary Mass-Preserving Chemical Reaction Network. - Anne Shiu (AB, 2008)

Three Counter-Examples on Semi-Graphoids. - Raymond Hemmecke; Jason Morton; Anne Shiu; Bernd Sturmfels; Oliver Wienand (Comb. Probab. Comput., 2008)

Toric dynamical systems. - Gheorghe Craciun; Alicia Dickenstein; Anne Shiu; Bernd Sturmfels (J. Symb. Comput., 2009)

Convex Rank Tests and Semigraphoids. - Jason Morton; Lior Pachter; Anne Shiu; Bernd Sturmfels; Oliver Wienand (SIAM J. Discret. Math., 2009)

The Dynamics of Weakly Reversible Population Processes near Facets. - David F. Anderson; Anne Shiu (SIAM J. Appl. Math., 2010)

Algebraic methods for biochemical reaction network theory. - Anne Shiu (2010)

A projection argument for differential inclusions, with applications to persistence of mass-action kinetics - Manoj Gopalkrishnan; Ezra Miller; Anne Shiu (CoRR, 2012)

Symbolic Methods for Chemical Reaction Networks (Dagstuhl Seminar 12462). - François Boulier; Anne Shiu; Thomas Sturm 001; Andreas Weber 004 (Dagstuhl Reports, 2012)

Simplifying the Jacobian Criterion for Precluding Multistationarity in Chemical Reaction Networks. - Badal Joshi; Anne Shiu (SIAM J. Appl. Math., 2012)

A Geometric Approach to the Global Attractor Conjecture. - Manoj Gopalkrishnan; Ezra Miller; Anne Shiu (SIAM J. Appl. Dyn. Syst., 2014)

Analyzing multistationarity in chemical reaction networks using the determinant optimization method. - Bryan Félix; Anne Shiu; Zev Woodstock (Appl. Math. Comput., 2016)

Sign Conditions for Injectivity of Generalized Polynomial Maps with Applications to Chemical Reaction Networks and Real Algebraic Geometry. - Stefan Müller 009; Elisenda Feliu; Georg Regensburger; Carsten Conradi; Anne Shiu; Alicia Dickenstein (Found. Comput. Math., 2016)

Obstructions to convexity in neural codes. - Caitlin Lienkaemper; Anne Shiu; Zev Woodstock (Adv. Appl. Math., 2017)

What Makes a Neural Code Convex? - Carina Curto; Elizabeth Gross; Jack Jeffries; Katherine Morrison; Mohamed Omar; Zvi Rosen; Anne Shiu; Nora Youngs (SIAM J. Appl. Algebra Geom., 2017)

Which Small Reaction Networks Are Multistationary? - Badal Joshi; Anne Shiu (SIAM J. Appl. Dyn. Syst., 2017)

Algebraic signatures of convex and non-convex codes. - Carina Curto; Elizabeth Gross; Jack Jeffries; Katherine Morrison; Zvi Rosen; Anne Shiu; Nora Youngs (CoRR, 2018)

Gröbner bases of neural ideals. - Rebecca Garcia; Luis David García-Puente; Ryan Kruse; Jessica Liu; Dane Miyata; Ethan Petersen; Kaitlyn Phillipson; Anne Shiu (Int. J. Algebra Comput., 2018)

Neural Codes, Decidability, and a New Local Obstruction to Convexity. - Aaron Chen; Florian Frick; Anne Shiu (SIAM J. Appl. Algebra Geom., 2019)

Linear Compartmental Models: Input-Output Equations and Operations That Preserve Identifiability. - Elizabeth Gross; Heather A. Harrington; Nicolette Meshkat; Anne Shiu (SIAM J. Appl. Math., 2019)

Neural codes and the factor complex. - Alexander Ruys de Perez; Laura Felicia Matusevich; Anne Shiu (Adv. Appl. Math., 2020)

Identifiability of linear compartmental models: The singular locus. - Elizabeth Gross; Nicolette Meshkat; Anne Shiu (Adv. Appl. Math., 2022)

Identifiability of linear compartmental tree models and a general formula for input-output equations. - Cashous Bortner; Elizabeth Gross; Nicolette Meshkat; Anne Shiu; Seth Sullivant (Adv. Appl. Math., 2023)

Nondegenerate Neural Codes and Obstructions to Closed-Convexity. - Patrick Chan; Katherine Johnston; Joseph Lent; Alexander Ruys de Perez; Anne Shiu (SIAM J. Discret. Math., 2023)

Wheels: A new criterion for non-convexity of neural codes. - Alexander Ruys de Perez; Laura Felicia Matusevich; Anne Shiu (Adv. Appl. Math., 2023)

Prevalence of Multistationarity and Absolute Concentration Robustness in Reaction Networks. - Badal Joshi; Nidhi Kaihnsa; Tung D. Nguyen; Anne Shiu (SIAM J. Appl. Math., 2023)

On the connectedness of multistationarity regions of small reaction networks. - Allison McClure; Anne Shiu (J. Symb. Comput., 2024)

Absolute concentration robustness: Algebra and geometry. - Luis David García-Puente; Elizabeth Gross; Heather A. Harrington; Matthew D. Johnston; Nicolette Meshkat; Mercedes Pérez Millán; Anne Shiu (J. Symb. Comput., 2025)