A Pseudo-boolean Programming Approach for Computing the Breakpoint Distance Between Two Genomes with Duplicate Genes. - Sébastien Angibaud; Guillaume Fertin; Irena Rusu; Annelyse Thévenin; Stéphane Vialette (RECOMB-CG, 2007)

Efficient Tools for Computing the Number of Breakpoints and the Number of Adjacencies between Two Genomes with Duplicate Genes. - Sébastien Angibaud; Guillaume Fertin; Irena Rusu; Annelyse Thévenin; Stéphane Vialette (J. Comput. Biol., 2008)

Pseudo Boolean Programming for Partially Ordered Genomes. - Sébastien Angibaud; Guillaume Fertin; Annelyse Thévenin; Stéphane Vialette (RECOMB-CG, 2009)

On the Approximability of Comparing Genomes with Duplicates. - Sébastien Angibaud; Guillaume Fertin; Irena Rusu; Annelyse Thévenin; Stéphane Vialette (J. Graph Algorithms Appl., 2009)

Aspects algorithmiques des réarrangements génomiques : duplications et ordres partiels. (Algorithmic Aspects of Genome Rearrangements: Duplications and Partial Orders). - Annelyse Thévenin (2009)

Gene family assignment-free comparative genomics. - Daniel Doerr; Annelyse Thévenin; Jens Stoye (BMC Bioinform., 2012)

The Potential of Family-Free Genome Comparison. - Marília D. V. Braga; Cédric Chauve; Daniel Doerr; Katharina Jahn 001; Jens Stoye; Annelyse Thévenin; Roland Wittler (Models and Algorithms for Genome Evolution, 2013)

On the Multichromosomal Hultman Number. - Pedro Feijão; Fábio Viduani Martinez; Annelyse Thévenin (BSB, 2014)

On the distribution of cycles and paths in multichromosomal breakpoint graphs and the expected value of rearrangement distance. - Pedro Feijão; Fábio Viduani Martinez; Annelyse Thévenin (BMC Bioinform., 2015)

The SCJ Small Parsimony Problem for Weighted Gene Adjacencies. - Nina Luhmann; Annelyse Thévenin; Aïda Ouangraoua; Roland Wittler; Cédric Chauve (ISBRA, 2016)

The SCJ small parsimony problem for weighted gene adjacencies (Extended version). - Nina Luhmann; Annelyse Thévenin; Aïda Ouangraoua; Roland Wittler; Cédric Chauve (CoRR, 2016)

The SCJ Small Parsimony Problem for Weighted Gene Adjacencies. - Nina Luhmann; Manuel Lafond; Annelyse Thévenin; Aïda Ouangraoua; Roland Wittler; Cédric Chauve (IEEE ACM Trans. Comput. Biol. Bioinform., 2019)