bioDBnet: the biological database network. - Uma Mudunuri; Anney Che; Ming Yi; Robert M. Stephens (Bioinform., 2009)

Seeking unique and common biological themes in multiple gene lists or datasets: pathway pattern extraction pipeline for pathway-level comparative analysis. - Ming Yi; Uma Mudunuri; Anney Che; Robert M. Stephens (BMC Bioinform., 2009)

AVIA v2.0: annotation, visualization and impact analysis of genomic variants and genes. - Hue Vuong; Anney Che; Sarangan Ravichandran; Brian T. Luke; Jack R. Collins; Uma S. Mudunuri (Bioinform., 2015)

AVIA 3.0: interactive portal for genomic variant and sample level analysis. - Hue V. Reardon; Anney Che; Brian T. Luke; Sarangan Ravichandran; Jack R. Collins; Uma S. Mudunuri (Bioinform., 2021)