Utilisation des destinées pour la décision et sa complexité dans le cas de formules à profondeur de quantification bornée sur des structures logiques finies et infinies. (Using Destinies for the Decision Problem of Sets of Bounded Quantifier Depth Sentences in Finite or Infinite Structures). - Annie Chateau (2003)

Reconstructing Ancestral Gene Orders Using Conserved Intervals. - Anne Bergeron; Mathieu Blanchette; Annie Chateau; Cédric Chauve (WABI, 2004)

On the complexity of decision using destinies in H-bounded structures. - Annie Chateau (Theor. Comput. Sci., 2004)

Inferring Positional Homologs with Common Intervals of Sequences. - Guillaume Blin; Annie Chateau; Cédric Chauve; Yannick Gingras (Comparative Genomics, 2006)

The ultra-weak Ash conjecture and some particular cases. - Annie Chateau; Malika More (Math. Log. Q., 2006)

Exploring Genome Rearrangements using Virtual Hybridization. - Mahdi Belcaid; Anne Bergeron; Annie Chateau; Cédric Chauve; Yannick Gingras; Guylaine Poisson; M. Vendette (APBC, 2007)

Perfect DCJ Rearrangement. - Sèverine Bérard; Annie Chateau; Cédric Chauve; Christophe Paul; Eric Tannier (RECOMB-CG, 2008)

Computation of Perfect DCJ Rearrangement Scenarios with Linear and Circular Chromosomes. - Sèverine Bérard; Annie Chateau; Cédric Chauve; Christophe Paul; Eric Tannier (J. Comput. Biol., 2009)

Approximate Common Intervals in Multiple Genome Comparison. - Annie Chateau; Pierre Riou; Eric Rivals (BIBM, 2011)

A CSP Approach for Metamodel Instantiation. - Adel Ferdjoukh; Anne-Elisabeth Baert; Annie Chateau; Remi Coletta; Clémentine Nebut (ICTAI, 2013)

Complexity and Polynomial-Time Approximation Algorithms around the Scaffolding Problem. - Annie Chateau; Rodolphe Giroudeau (AlCoB, 2014)

On the Complexity of Scaffolding Problems: From Cliques to Sparse Graphs. - Mathias Weller; Annie Chateau; Rodolphe Giroudeau (COCOA, 2015)

Instantiation of Meta-models Constrained with OCL - A CSP Approach. - Adel Ferdjoukh; Anne-Elisabeth Baert; Eric Bourreau; Annie Chateau; Remi Coletta; Clémentine Nebut (MODELSWARD, 2015)

A complexity and approximation framework for the maximization scaffolding problem. - Annie Chateau; Rodolphe Giroudeau (Theor. Comput. Sci., 2015)

Exact approaches for scaffolding. - Mathias Weller; Annie Chateau; Rodolphe Giroudeau (BMC Bioinform., 2015)

Instance Guaranteed Ratio on Greedy Heuristic for Genome Scaffolding. - Clément Dallard; Mathias Weller; Annie Chateau; Rodolphe Giroudeau (COCOA, 2016)

A Model-Driven Approach to Generate Relevant and Realistic Datasets. - Adel Ferdjoukh; Eric Bourreau; Annie Chateau; Clémentine Nebut (SEKE, 2016)

Aligning the unalignable: bacteriophage whole genome alignments. - Sèverine Bérard; Annie Chateau; Nicolas Pompidor; Paul Guertin; Anne Bergeron; Krister M. Swenson (BMC Bioinform., 2016)

New Insights for Power Edge Set Problem. - Benoît Darties; Annie Chateau; Rodolphe Giroudeau; Mathias Weller (COCOA (1), 2017)

On the Linearization of Scaffolds Sharing Repeated Contigs. - Mathias Weller; Annie Chateau; Rodolphe Giroudeau (COCOA (2), 2017)

Improved Complexity for Power Edge Set Problem. - Benoît Darties; Annie Chateau; Rodolphe Giroudeau; Mathias Weller (IWOCA, 2017)

New Results About the Linearization of Scaffolds Sharing Repeated Contigs. - Dorine Tabary; Tom Davot; Mathias Weller; Annie Chateau; Rodolphe Giroudeau (COCOA, 2018)

On the Hardness of Approximating Linearization of Scaffolds Sharing Repeated Contigs. - Tom Davot; Annie Chateau; Rodolphe Giroudeau; Mathias Weller (RECOMB-CG, 2018)

Scaffolding Problems Revisited: Complexity, Approximation and Fixed Parameter Tractable Algorithms, and Some Special Cases. - Mathias Weller; Annie Chateau; Clément Dallard; Rodolphe Giroudeau (Algorithmica, 2018)

A framework for cost-constrained genome rearrangement under Double Cut and Join. - Pijus Simonaitis; Annie Chateau; Krister M. Swenson (CoRR, 2018)

On residual approximation in solution extension problems. - Mathias Weller; Annie Chateau; Rodolphe Giroudeau; Jean-Claude König; Valentin Pollet (J. Comb. Optim., 2018)

Complexity and lowers bounds for Power Edge Set Problem. - Benoît Darties; Nicolas Champseix; Annie Chateau; Rodolphe Giroudeau; Mathias Weller (J. Discrete Algorithms, 2018)

New Polynomial-Time Algorithm Around the Scaffolding Problem. - Tom Davot; Annie Chateau; Rodolphe Giroudeau; Mathias Weller (AlCoB, 2019)

Power Edge Set and Zero Forcing Set Remain Difficult in Cubic Graphs. - Pierre Cazals; Benoît Darties; Annie Chateau; Rodolphe Giroudeau; Mathias Weller (IWOCA, 2019)

Weighted Minimum-Length Rearrangement Scenarios. - Pijus Simonaitis; Annie Chateau; Krister M. Swenson (WABI, 2019)

Genome Assembly Using Reinforcement Learning. - Roberto Xavier; Kleber Padovani de Souza; Annie Chateau; Ronnie Alves (BSB, 2019)

A general framework for genome rearrangement with biological constraints. - Pijus Simonaitis; Annie Chateau; Krister M. Swenson (Algorithms Mol. Biol., 2019)

Machine learning meets genome assembly. - Kleber Padovani de Souza; João Carlos Setubal; André Carlos Ponce de Leon Ferreira de Carvalho; Guilherme Oliveira; Annie Chateau; Ronnie Alves (Briefings Bioinform., 2019)

Linearizing Genomes: Exact Methods and Local Search. - Tom Davot; Annie Chateau; Rodolphe Giroudeau; Mathias Weller (SOFSEM, 2020)

Producing Genomic Sequences after Genome Scaffolding with Ambiguous Paths: Complexity, Approximation and Lower Bounds. - Tom Davot; Annie Chateau; Rodolphe Giroudeau; Mathias Weller; Dorine Tabary (Algorithmica, 2021)

BREC: an R package/Shiny app for automatically identifying heterochromatin boundaries and estimating local recombination rates along chromosomes. - Yasmine Mansour; Annie Chateau; Anna-Sophie Fiston-Lavier (BMC Bioinform., 2021)

Efficient assembly consensus algorithms for divergent contig sets. - Annie Chateau; Tom Davot; Manuel Lafond (Comput. Biol. Chem., 2021)

Towards a reinforcement learning de novo genome assembler. - Kleber Padovani de Souza; Roberto Xavier; André C. P. L. F. de Carvalho; Anna Reali; Annie Chateau; Ronnie Alves (CoRR, 2021)

Involving repetitive regions in scaffolding improvement. - Quentin Delorme; Rémy Costa; Yasmine Mansour; Anna-Sophie Fiston-Lavier; Annie Chateau (J. Bioinform. Comput. Biol., 2021)

On a greedy approach for genome scaffolding. - Tom Davot; Annie Chateau; Rohan Fossé; Rodolphe Giroudeau; Mathias Weller (Algorithms Mol. Biol., 2022)

RedOak: a reference-free and alignment-free structure for indexing a collection of similar genomes. - Clément Agret; Annie Chateau; Gaëtan Droc; Gautier Sarah; Manuel Ruiz; Alban Mancheron (J. Open Source Softw., 2022)