Methodologies for Extracting Functional Pharmacogenomic Experiments from International Repository. - Yi-An Lin; Annie P. Chiang; Ray Lin; Peggy Yao; Rong Chen 006; Atul J. Butte (AMIA, 2007)

Comparison of concept recognizers for building the Open Biomedical Annotator. - Nigam H. Shah; Nipun Bhatia; Clément Jonquet; Daniel L. Rubin; Annie P. Chiang; Mark A. Musen (BMC Bioinform., 2009)

Ontology-driven indexing of public datasets for translational bioinformatics. - Nigam H. Shah; Clément Jonquet; Annie P. Chiang; Atul J. Butte; Rong Chen 006; Mark A. Musen (BMC Bioinform., 2009)

Network-Based Elucidation of Human Disease Similarities Reveals Common Functional Modules Enriched for Pluripotent Drug Targets. - Silpa Suthram; Joel Dudley; Annie P. Chiang; Rong Chen 006; Trevor Hastie; Atul J. Butte (PLoS Comput. Biol., 2010)