Highlights from the tenth ISCB Student Council Symposium 2014. - Farzana Rahman; Katie Wilkins; Annika Jacobsen; Alexander Junge; Esmeralda Vicedo; Dan F. DeBlasio; Anupama Jigisha; Tomás Di Domenico (BMC Bioinform., 2015)

BioASF: a framework for automatically generating executable pathway models specified in BioPAX. - Reza Haydarlou; Annika Jacobsen; Nicola Bonzanni; K. Anton Feenstra; Sanne Abeln; Jaap Heringa (Bioinform., 2016)

The FAIRification of Data and the Potential of FAIR Resources Demonstrated, in Practice, at the Rome Bring Your Own Data Workshop. - Claudio Carta; Marco Roos; Annika Jacobsen; Rajaram Kaliyaperumal; Mark Thompson 002; Mark D. Wilkinson; Ronald Cornet; Andra Waagmeester; David van Enckevort; Mascha Jansen; Luana Licata; Allegra Via; et al. (SWAT4LS, 2017)

Overview of a Suite of Tools and Training Material for Implementing FAIR Data Principles. - Mark Thompson 002; Luiz Olavo Bonino da Silva Santos; Kees Burger; Rajaram Kaliyaperumal; Erik A. Schultes; Annika Jacobsen; Claudio Carta; Richard Finkers; David van Enckevort; Mascha Jansen; Barend Mons; Marco Roos (SWAT4LS, 2017)

Wikidata as an intuitive resource towards semantic data modeling in data FAIRification. - Annika Jacobsen; Andra Waagmeester; Rajaram Kaliyaperumal; Gregory S. Stupp; Lynn M. Schriml; Mark Thompson 002; Andrew I. Su; Marco Roos (SWAT4LS, 2018)

The FAIR Funder pilot programme to make it easy for funders to require and for grantees to produce FAIR Data. - Peter Wittenburg; Hana Pergl Sustkova; Annalisa Montesanti; Margreet Bloemers; S. H. de Waard; Mark A. Musen; John B. Graybeal; Kristina M. Hettne; Annika Jacobsen; Robert Pergl; Rob W. W. Hooft; Christine Staiger; et al. (CoRR, 2019)

The ability of transcription factors to differentially regulate gene expression is a crucial component of the mechanism underlying inversion, a frequently observed genetic interaction pattern. - Saman Amini; Annika Jacobsen; Olga Ivanova; Philip Lijnzaad; Jaap Heringa; Frank C. P. Holstege; K. Anton Feenstra; Patrick Kemmeren (PLoS Comput. Biol., 2019)

Applying the FAIR Data Principles to the Registry of Vascular Anomalies (VASCA). - Bruna dos Santos Vieira; Karlijn H. J. Groenen; Peter A. C. 't Hoen; Annika Jacobsen; Marco Roos; Rajaram Kaliyaperumal; Martijn G. Kersloot; Ronald Cornet; Leo J. Schultze Kool (dHealth, 2020)

A framework for exhaustive modelling of genetic interaction patterns using Petri nets. - Annika Jacobsen; Olga Ivanova; Saman Amini; Jaap Heringa; Patrick Kemmeren; K. Anton Feenstra (Bioinform., 2020)

FAIR Principles: Interpretations and Implementation Considerations. - Annika Jacobsen; Ricardo de Miranda Azevedo; Nick S. Juty; Dominique Batista; Simon J. Coles; Ronald Cornet; Mélanie Courtot; Mercè Crosas; Michel Dumontier; Chris T. A. Evelo; Carole A. Goble; Giancarlo Guizzardi; et al. (Data Intell., 2020)

A Generic Workflow for the Data FAIRification Process. - Annika Jacobsen; Rajaram Kaliyaperumal; Luiz Olavo Bonino da Silva Santos; Barend Mons; Erik Schultes; Marco Roos; Mark Thompson 002 (Data Intell., 2020)

The FAIR Principles: First Generation Implementation Choices and Challenges. - Barend Mons; Erik Schultes; Fenghong Liu 002; Annika Jacobsen (Data Intell., 2020)

FAIR Convergence Matrix: Optimizing the Reuse of Existing FAIR-Related Resources. - Hana Pergl Sustkova; Kristina Maria Hettne; Peter Wittenburg; Annika Jacobsen; Tobias Kuhn; Robert Pergl; Jan Slifka; Peter McQuilton; Barbara Magagna; Susanna-Assunta Sansone; Markus Stocker; Melanie Imming; et al. (Data Intell., 2020)

De-novo FAIRification via an Electronic Data Capture system by automated transformation of filled electronic Case Report Forms into machine-readable data. - Martijn G. Kersloot; Annika Jacobsen; Karlijn H. J. Groenen; Bruna dos Santos Vieira; Rajaram Kaliyaperumal; Ameen Abu-Hanna; Ronald Cornet; Peter A. C. 't Hoen; Marco Roos; Leo J. Schultze Kool; Derk L. Arts (J. Biomed. Informatics, 2021)

The Use of Foundational Ontologies in Bioinformatics. - César Henrique Bernabé; Núria Queralt-Rosinach; Vítor E. Silva Souza; Luiz Olavo Bonino da Silva Santos; Annika Jacobsen; Barend Mons; Marco Roos (SWAT4HCLS, 2022)

Semantic modelling of common data elements for rare disease registries, and a prototype workflow for their deployment over registry data. - Rajaram Kaliyaperumal; Mark D. Wilkinson; Pablo Alarcón Moreno; Nirupama Benis; Ronald Cornet; Bruna dos Santos Vieira; Michel Dumontier; César Henrique Bernabé; Annika Jacobsen; Clémence M. A. Le Cornec; Mario Prieto Godoy; Núria Queralt-Rosinach; et al. (J. Biomed. Semant., 2022)

Applying the FAIR principles to data in a hospital: challenges and opportunities in a pandemic. - Núria Queralt-Rosinach; Rajaram Kaliyaperumal; César Henrique Bernabé; Qinqin Long; Simone A. Joosten; Henk Jan van der Wijk; Erik Flikkenschild; Kees Burger; Annika Jacobsen; Barend Mons; Marco Roos (J. Biomed. Semant., 2022)

A goal-oriented method for FAIRification planning. - César Henrique Bernabé; Tiago Prince Sales; Erik Schultes; Niek van Ulzen; Annika Jacobsen; Luiz Olavo Bonino da Silva Santos; Barend Mons; Marco Roos (ER (Companion), 2023)

A Method to Facilitate the Identification of FAIRification Objectives. - César Henrique Bernabé; Annika Jacobsen; Luiz Olavo Bonino da Silva Santos; Marco Roos (ICBO, 2023)

Surveyed common data access policies preferences amongst European Reference Networks. - Alberto Cámara Ballesteros; Nirupama Benis; César Henrique Bernabé; Inés de Oliveira Coelho; Clémence M. A. Le Cornec; Aylin Demir; Bruna dos Santos Vieira; Jose Antonio Ramírez; K. Joeri van der Velde; Shuxin Zhang; Ronald Cornet; Annika Jacobsen; et al. (SWAT4HCLS, 2023)

A Resource for Guiding Data Stewards to Make European Rare Disease Patient Registries FAIR. - Philip van Damme; Pablo Alarcón Moreno; César Henrique Bernabé; Alberto Cámara Ballesteros; Clémence M. A. Le Cornec; Bruna dos Santos Vieira; K. Joeri van der Velde; Shuxin Zhang; Claudio Carta; Ronald Cornet; Peter A. C. 't Hoen; Annika Jacobsen; et al. (Data Sci. J., 2023)

The use of foundational ontologies in biomedical research. - César Henrique Bernabé; Núria Queralt-Rosinach; Vítor E. Silva Souza; Luiz Olavo Bonino da Silva Santos; Barend Mons; Annika Jacobsen; Marco Roos (J. Biomed. Semant., 2023)

Building Expertise on FAIR Through Evolving Bring Your Own Data (BYOD) Workshops: Describing the Data, Software, and Management-focused Approaches and Their Evolution. - César Henrique Bernabé; Lieze Thielemans; Rajaram Kaliyaperumal; Claudio Carta; Shuxin Zhang; Celia W. G. van Gelder; Nirupama Benis; Luiz Olavo Bonino da Silva Santos; Ronald Cornet; Bruna dos Santos Vieira; Nawel Lalout; Inês Henriques; et al. (Data Intell., 2024)

Restructuring Knowledge Graphs with Conceptual Models: Implications for Machine Learning Predictions in Drug Repurposing. - César Bernabé; Rosa Zwart; Pablo Perdomo-Quinteiro; Annika Jacobsen; Tiago Prince Sales; Núria Queralt-Rosinach; Katherine Wolstencroft; Luiz Olavo Bonino da Silva Santos; Barend Mons; Marco Roos (CAiSE (2), 2025)

GO-Plan: A goal-oriented method for FAIRification planning. - César Bernabé; Isadora Valle Sousa; Tiago Prince Sales; Erik Schultes; Niek van Ulzen; Vítor E. Silva Souza; Annika Jacobsen; Luiz Olavo Bonino da Silva Santos; Barend Mons; Marco Roos (Inf. Serv. Use, 2025)