Arabidopsis thaliana regulatory element analyzer. - Ananyo Choudhury; Ansuman Lahiri (Bioinform., 2008)

TRABAS: A Database for Transcription Regulation by ABA Signaling. - Ananyo Choudhury; Ansuman Lahiri (Silico Biol., 2008)

Conformational Preferences of Modified Uridines: Comparison of AMBER Derived Force Fields. - Indrajit Deb; Joanna Sarzynska; Lennart Nilsson; Ansuman Lahiri (J. Chem. Inf. Model., 2014)

Reparameterizations of the χ Torsion and Lennard-Jones σ Parameters Improve the Conformational Characteristics of Modified Uridines. - Indrajit Deb; Rupak Pal; Joanna Sarzynska; Ansuman Lahiri (J. Comput. Chem., 2016)

Effect of Inactivating Mutations on Peptide Conformational Ensembles: The Plant Polypeptide Hormone Systemin. - Saikat Dutta Chowdhury; Aditya K. Sarkar; Ansuman Lahiri (J. Chem. Inf. Model., 2016)

Molecular Dynamics Simulation of the Conformational Preferences of Pseudouridine Derivatives: Improving the Distribution in the Glycosidic Torsion Space. - Nivedita Dutta; Joanna Sarzynska; Ansuman Lahiri (J. Chem. Inf. Model., 2020)

Data-informed reparameterization of modified RNA and the effect of explicit water models: application to pseudouridine and derivatives. - Nivedita Dutta; Indrajit Deb; Joanna Sarzynska; Ansuman Lahiri (J. Comput. Aided Mol. Des., 2022)