GateFinder: projection-based gating strategy optimization for flow and mass cytometry. - Nima Aghaeepour; Erin F. Simonds; David J. H. F. Knapp; Robert V. Bruggner; Karen Sachs; Anthony Culos; Pier Federico Gherardini; Nikolay Samusik; Gabriela K. Fragiadakis; Sean Bendall; Brice Gaudilliere; Martin S. Angst; et al. (Bioinform., 2018)

Multiomics modeling of the immunome, transcriptome, microbiome, proteome and metabolome adaptations during human pregnancy. - Mohammad Sajjad Ghaemi; Daniel B. DiGiulio; Kévin Contrepois; Benjamin J. Callahan; Thuy T. M. Ngo; Brittany Lee-McMullen; Benoit Lehallier; Anna Robaczewska; David Mcilwain; Yael Rosenberg-Hasson; Ronald J. Wong; Cecele Quaintance; et al. (Bioinform., 2019)

Integration of mechanistic immunological knowledge into a machine learning pipeline improves predictions. - Anthony Culos; Amy Tsai; Natalie Stanley; Martin Becker 003; Mohammad Sajjad Ghaemi; David Mcilwain; Ramin Fallahzadeh; Athena Tanada; Huda Nassar; Camilo Espinosa; Maria Xenochristou; Edward Ganio; et al. (Nat. Mach. Intell., 2020)

Early prediction and longitudinal modeling of preeclampsia from multiomics. - Ivana Maric; Kévin Contrepois; Mira N. Moufarrej; Ina A. Stelzer; Dorien Feyaerts; Xiaoyuan Han; Andy Tang; Natalie Stanley; Ronald J. Wong; Gavin M. Traber; Mathew Ellenberger; Alan L. Chang; et al. (Patterns, 2022)

Large-scale correlation network construction for unraveling the coordination of complex biological systems. - Martin Becker 003; Huda Nassar; Camilo Espinosa; Ina A. Stelzer; Dorien Feyaerts; Eloïse Berson; Neda Hajiakhoond Bidoki; Alan L. Chang; Geetha Saarunya; Anthony Culos; Davide De Francesco; Ramin Fallahzadeh; et al. (Nat. Comput. Sci., 2023)