Row-Wise Backward Stable Elimination Methods for the Equality Constrained Least Squares Problem. - Anthony J. Cox; Nicholas J. Higham (SIAM J. Matrix Anal. Appl., 1999)

CNAseg - a novel framework for identification of copy number changes in cancer from second-generation sequencing data. - Sergii Ivakhno; Tom Royce; Anthony J. Cox; Dirk J. Evers; R. Keira Cheetham; Simon Tavaré (Bioinform., 2010)

Lightweight BWT Construction for Very Large String Collections. - Markus J. Bauer; Anthony J. Cox; Giovanna Rosone (CPM, 2011)

Lightweight LCP Construction for Next-Generation Sequencing Datasets. - Markus J. Bauer; Anthony J. Cox; Giovanna Rosone; Marinella Sciortino (WABI, 2012)

Comparing DNA Sequence Collections by Direct Comparison of Compressed Text Indexes. - Anthony J. Cox; Tobias Jakobi; Giovanna Rosone; Ole Schulz-Trieglaff (WABI, 2012)

Large-scale compression of genomic sequence databases with the Burrows-Wheeler transform. - Anthony J. Cox; Markus J. Bauer; Tobias Jakobi; Giovanna Rosone (Bioinform., 2012)

metaBEETL: high-throughput analysis of heterogeneous microbial populations from shotgun DNA sequences. - Christina Ander; Ole Schulz-Trieglaff; Jens Stoye; Anthony J. Cox (BMC Bioinform., 2013)

Lightweight algorithms for constructing and inverting the BWT of string collections. - Markus J. Bauer; Anthony J. Cox; Giovanna Rosone (Theor. Comput. Sci., 2013)

Adaptive reference-free compression of sequence quality scores. - Lilian Janin; Giovanna Rosone; Anthony J. Cox (Bioinform., 2014)

BEETL-fastq: a searchable compressed archive for DNA reads. - Lilian Janin; Ole Schulz-Trieglaff; Anthony J. Cox (Bioinform., 2014)

NxTrim: optimized trimming of Illumina mate pair reads. - Jared O'Connell; Ole Schulz-Trieglaff; Emma Carlson; Matthew M. Hims; Niall A. Gormley; Anthony J. Cox (Bioinform., 2015)

RLZAP: Relative Lempel-Ziv with Adaptive Pointers. - Anthony J. Cox; Andrea Farruggia; Travis Gagie; Simon J. Puglisi; Jouni Sirén (SPIRE, 2016)

Rapid genotype refinement for whole-genome sequencing data using multi-variate normal distributions. - Rudy Arthur; Jared O'Connell; Ole Schulz-Trieglaff; Anthony J. Cox (Bioinform., 2016)

Manta: rapid detection of structural variants and indels for germline and cancer sequencing applications. - Xiaoyu Chen; Ole Schulz-Trieglaff; Richard Shaw; Bret Barnes; Felix Schlesinger; Morten Källberg; Anthony J. Cox; Semyon Kruglyak; Christopher T. Saunders (Bioinform., 2016)

Lightweight LCP construction for very large collections of strings. - Anthony J. Cox; Fabio Garofalo; Giovanna Rosone; Marinella Sciortino (J. Discrete Algorithms, 2016)

AKT: ancestry and kinship toolkit. - Rudy Arthur; Ole Schulz-Trieglaff; Anthony J. Cox; Jared O'Connell (Bioinform., 2017)

tHapMix: simulating tumour samples through haplotype mixtures. - Sergii Ivakhno; Camilla Colombo; Stephen Tanner; Philip Tedder; Stefano Berri; Anthony J. Cox (Bioinform., 2017)

Canvas SPW: calling de novo copy number variants in pedigrees. - Sergii Ivakhno; Eric Roller; Camilla Colombo; Philip Tedder; Anthony J. Cox (Bioinform., 2018)

A Class of Heuristics for Reducing the Number of BWT-Runs in the String Ordering Problem. - Gianmarco Bertola; Anthony J. Cox; Veronica Guerrini; Giovanna Rosone (CPM, 2024)