A Scalable Method for Molecular Network Reconstruction Identifies Properties of Targets and Mutations in Acute Myeloid Leukemia. - Edison Ong; Anthony Szedlak; Yunyi Kang; Peyton Smith; Nicholas Smith; Madison McBride; Darren Finlay; Kristiina Vuori; James Mason; Edward D. Ball; Carlo Piermarocchi; Giovanni Paternostro (J. Comput. Biol., 2015)

Evolutionary and Topological Properties of Genes and Community Structures in Human Gene Regulatory Networks. - Anthony Szedlak; Nicholas Smith; Li Liu 035; Giovanni Paternostro; Carlo Piermarocchi (PLoS Comput. Biol., 2016)

Cell cycle time series gene expression data encoded as cyclic attractors in Hopfield systems. - Anthony Szedlak; Spencer Sims; Nicholas Smith; Giovanni Paternostro; Carlo Piermarocchi (PLoS Comput. Biol., 2017)

Polled Digital Cell Sorter (p-DCS): Automatic identification of hematological cell types from single cell RNA-sequencing clusters. - Sergii Domanskyi; Anthony Szedlak; Nathaniel T Hawkins; Jiayin Wang; Giovanni Paternostro; Carlo Piermarocchi (BMC Bioinform., 2019)