VNTRDB: a bacterial variable number tandem repeat locus database. - Chia-Hung Chang; Yu-Chung Chang; Anthony Underwood; Chien-Shun Chiou; Cheng-Yan Kao (Nucleic Acids Res., 2007)

snp-search: simple processing, manipulation and searching of SNPs from high-throughput sequencing. - Ali Al-Shahib; Anthony Underwood (BMC Bioinform., 2013)

BugMat and FindNeighbour: command line and server applications for investigating bacterial relatedness. - Oriol Mazariegos-Canellas; Trien Do; Tim E. A. Peto; David W. Eyre; Anthony Underwood; Derrick W. Crook; David H. Wyllie (BMC Bioinform., 2017)

SnapperDB: a database solution for routine sequencing analysis of bacterial isolates. - Timothy Dallman; Philip Ashton; Ulf Schafer; Aleksey Jironkin; Anais Painset; Sharif Shaaban; Hassan Hartman; Richard Myers; Anthony Underwood; Claire Jenkins; Kathie Grant (Bioinform., 2018)