PALADIN: protein alignment for functional profiling whole metagenome shotgun data. - Anthony Westbrook; Jordan Ramsdell; Taruna Schuelke; Louisa Normington; R. Daniel Bergeron; W. Kelley Thomas; Matthew D. MacManes (Bioinform., 2017)

A Novel Approach for Increasing Taxonomic Resolution in Protein-Based Alignments. - Cooper J. Park; Keir J. Macartney; Junfu Shen; Kunpeng Xie; Xin Zhang; R. Daniel Bergeron; W. Kelley Thomas; Cheryl P. Andam; Anthony Westbrook (BCB, 2018)

RepeatFS: a file system providing reproducibility through provenance and automation. - Anthony Westbrook; Elizabeth Varki; W. Kelley Thomas (Bioinform., 2021)