Membrane Interaction of Bound Ligands Contributes to the Negative Binding Cooperativity of the EGF Receptor. - Anton Arkhipov; Yibing Shan; Eric T. Kim; David E. Shaw (PLoS Comput. Biol., 2014)

Visual physiology of the layer 4 cortical circuit in silico. - Anton Arkhipov; Nathan W. Gouwens; Yazan N. Billeh; Sergey L. Gratiy; Ramakrishnan Iyer; Ziqiang Wei; Zihao Xu; Reza Abbasi-Asl; Jim Berg; Michael A. Buice; Nicholas Cain; Nuno daCosta; et al. (PLoS Comput. Biol., 2018)

Brain Modeling ToolKit: An open source software suite for multiscale modeling of brain circuits. - Kael Dai; Sergey L. Gratiy; Yazan N. Billeh; Richard Xu; Binghuang Cai; Nicholas Cain; Atle E. Rimehaug; Alexander J. Stasik; Gaute T. Einevoll; Stefan Mihalas; Christof Koch; Anton Arkhipov (PLoS Comput. Biol., 2020)

The SONATA data format for efficient description of large-scale network models. - Kael Dai; Juan Hernando; Yazan N. Billeh; Sergey L. Gratiy; Judit Planas; Andrew P. Davison; Salvador Dura-Bernal; Padraig Gleeson; Adrien Devresse; Benjamin K. Dichter; Michael Gevaert; James Gonzalo King; et al. (PLoS Comput. Biol., 2020)

Consistent cross-modal identification of cortical neurons with coupled autoencoders. - Rohan Gala; Agata Budzillo; Fahimeh Baftizadeh; Jeremy A. Miller; Nathan W. Gouwens; Anton Arkhipov; Gabe Murphy; Bosiljka Tasic; Hongkui Zeng; Michael Hawrylycz; Uygar Sümbül (Nat. Comput. Sci., 2021)

Non-Separability of Physical Systems as a Foundation of Consciousness. - Anton Arkhipov (Entropy, 2022)

Cybershuttle: An End-to-End Cyberinfrastructure Continuum to Accelerate Discovery in Science and Engineering. - Suresh Marru; Marlon E. Pierce; Beth Plale; Sudhakar Pamidighantam; Dimuthu Wannipurage; Marcus Christie; Isuru Ranawaka; Eroma Abeysinghe; Rob Quick; Emad Tajkhorshid; Seid Koric; Jim Basney; et al. (PEARC, 2023)

A survey of neurophysiological differentiation across mouse visual brain areas and timescales. - Saurabh R. Gandhi; William G. P. Mayner; William Marshall; Yazan N. Billeh; Corbett Bennett; Samuel D. Gale; Chris Mochizuki; Joshua H. Siegle; Shawn R. Olsen; Giulio Tononi; Christof Koch; Anton Arkhipov (Frontiers Comput. Neurosci., 2023)

NeuroAI for AI Safety. - Patrick J. Mineault; Niccoló Zanichelli; Joanne Zichen Peng; Anton Arkhipov; Eli Bingham; Julian Jara-Ettinger; Emily Mackevicius; Adam H. Marblestone; Marcelo Mattar; Andrew Payne; Sophia Sanborn; Karen Schroeder; et al. (CoRR, 2024)

Modeling circuit mechanisms of opposing cortical responses to visual flow perturbations. - Javier Galván Fraile; Franz Scherr; José J. Ramasco; Anton Arkhipov; Wolfgang Maass 001; Claudio R. Mirasso (PLoS Comput. Biol., 2024)

Uncovering population contributions to the extracellular potential in the mouse visual system using Laminar Population Analysis. - Atle E. Rimehaug; Anders M. Dale; Anton Arkhipov; Gaute T. Einevoll (PLoS Comput. Biol., 2024)