Evolution of Evolvability in Gene Regulatory Networks. - Anton Crombach; Paulien Hogeweg (PLoS Comput. Biol., 2008)

Is RNA-dependent RNA polymerase essential for transposon control? - Anton Crombach; Paulien Hogeweg (BMC Syst. Biol., 2011)

Efficient Reverse-Engineering of a Developmental Gene Regulatory Network. - Anton Crombach; Karl R. Wotton; Damjan Cicin-Sain; Maksat Ashyraliyev; Johannes Jaeger (PLoS Comput. Biol., 2012)

Evolution of early development in dipterans: Reverse-engineering the gap gene network in the moth midge Clogmia albipunctata (Psychodidae). - Anton Crombach; Mónica A. García-Solache; Johannes Jaeger (Biosyst., 2014)

Classification of transient behaviours in a time-dependent toggle switch model. - Berta Verd; Anton Crombach; Johannes Jaeger (BMC Syst. Biol., 2014)

BioPreDyn-bench: benchmark problems for kinetic modelling in systems biology. - Alejandro Fernández Villaverde; David Henriques; Kieran Smallbone; Sophia Bongard; Joachim Schmid 004; Damjan Cicin-Sain; Anton Crombach; Julio Saez-Rodriguez; Klaus Mauch; Eva Balsa-Canto; Pedro Mendes 001; Johannes Jaeger; et al. (CoRR, 2014)

BioPreDyn-bench: a suite of benchmark problems for dynamic modelling in systems biology. - Alejandro Fernández Villaverde; David Henriques; Kieran Smallbone; Sophia Bongard; Joachim Schmid 004; Damjan Cicin-Sain; Anton Crombach; Julio Saez-Rodriguez; Klaus Mauch; Eva Balsa-Canto; Pedro Mendes 001; Johannes Jaeger; et al. (BMC Syst. Biol., 2015)

SuperFly: a comparative database for quantified spatio-temporal gene expression patterns in early dipteran embryos. - Damjan Cicin-Sain; Antonio Hermoso Pulido; Anton Crombach; Karl R. Wotton; Eva Jiménez-Guri; Jean-François Taly; Guglielmo Roma; Johannes Jaeger (Nucleic Acids Res., 2015)

Scatter Search Applied to the Inference of a Development Gene Network. - Amir Masoud Abdol; Damjan Cicin-Sain; Jaap A. Kaandorp; Anton Crombach (Comput., 2017)

Dynamic Maternal Gradients Control Timing and Shift-Rates for Drosophila Gap Gene Expression. - Berta Verd; Anton Crombach; Johannes Jaeger (PLoS Comput. Biol., 2017)

Combining SHAP-Driven Co-clustering and Shallow Decision Trees to Explain XGBoost. - Ruggero G. Pensa; Anton Crombach; Sergio Peignier; Christophe Rigotti (DS (1), 2024)

Detecting gene regulatory network rewiring as changes in marker regulatory associations using only single-cell gene expression data. - Lisa Chabrier; Anton Crombach; Sergio Peignier; Christophe Rigotti (ICDM (Workshops), 2024)

Effective Pruning for Top-k Feature Search on the Basis of SHAP Values. - Lisa Chabrier; Anton Crombach; Sergio Peignier; Christophe Rigotti (IEEE Access, 2024)

Re_actShap : détection de rebranchements des réseaux de régulation d'expression génique à l'aide des valeurs SHAP. - Lisa Chabrier; Anton Crombach; Sergio Peignier; Christophe Rigotti (EGC, 2025)