Computation- and Space-Efficient Implementation of SSA. - Anton I. Korobeynikov (CoRR, 2009)

Consistency of Parametric MLE Under Mixed Case Interval Censoring. - Anton I. Korobeynikov (Commun. Stat. Simul. Comput., 2012)

Assembling Genomes and Mini-metagenomes from Highly Chimeric Reads. - Sergey Nurk; Anton Bankevich; Dmitry Antipov; Alexey A. Gurevich; Anton I. Korobeynikov; Alla L. Lapidus; Andrey D. Prjibelsky; Alex Pyshkin; Alexander Sirotkin 001; Yakov Sirotkin; Ramunas Stepanauskas; Jeffrey S. McLean; et al. (RECOMB, 2013)

BayesHammer: Bayesian clustering for error correction in single-cell sequencing. - Sergey I. Nikolenko; Anton I. Korobeynikov; Max A. Alekseyev (BMC Genom., 2013)

Assembling Single-Cell Genomes and Mini-Metagenomes From Chimeric MDA Products. - Sergey Nurk; Anton Bankevich; Dmitry Antipov; Alexey A. Gurevich; Anton I. Korobeynikov; Alla L. Lapidus; Andrey D. Prjibelski; Alex Pyshkin; Alexander Sirotkin 001; Yakov Sirotkin; Ramunas Stepanauskas; Scott R. Clingenpeel; et al. (J. Comput. Biol., 2013)

ExSPAnder: a universal repeat resolver for DNA fragment assembly. - Andrey D. Prjibelski; Irina Vasilinetc; Anton Bankevich; Alexey A. Gurevich; Tatiana Krivosheeva; Sergey Nurk; Son K. Pham; Anton I. Korobeynikov; Alla L. Lapidus; Pavel A. Pevzner (Bioinform., 2014)

Basic Singular Spectrum Analysis and forecasting with R. - Nina Golyandina; Anton I. Korobeynikov (Comput. Stat. Data Anal., 2014)

Assembling short reads from jumping libraries with large insert sizes. - Irina Vasilinetc; Andrey D. Prjibelski; Alexey A. Gurevich; Anton I. Korobeynikov; Pavel A. Pevzner (Bioinform., 2015)

metaSPAdes: A New Versatile de novo Metagenomics Assembler. - Sergey Nurk; Dmitry Meleshko; Anton I. Korobeynikov; Pavel A. Pevzner (RECOMB, 2016)

hybridSPAdes: an algorithm for hybrid assembly of short and long reads. - Dmitry Antipov; Anton I. Korobeynikov; Jeffrey S. McLean; Pavel A. Pevzner (Bioinform., 2016)

Assessing the Significance of Peptide Spectrum Match Scores. - Anastasiia Abramova; Anton I. Korobeynikov (WABI, 2017)

PathRacer: Racing Profile HMM Paths on Assembly Graph. - Alexander Shlemov; Anton I. Korobeynikov (AlCoB, 2019)

IonHammer: Homopolymer-Space Hamming Clustering for IonTorrent Read Error Correction. - Vasily Ershov; Artem Tarasov; Alla L. Lapidus; Anton I. Korobeynikov (J. Comput. Biol., 2019)

Sequence Analysis. - Andrey D. Prjibelski; Anton I. Korobeynikov; Alla L. Lapidus (Encyclopedia of Bioinformatics and Computational Biology (3), 2019)

SPAligner: alignment of long diverged molecular sequences to assembly graphs. - Tatiana Dvorkina; Dmitry Antipov; Anton I. Korobeynikov; Sergey Nurk (BMC Bioinform., 2020)

CDSnake: Snakemake pipeline for retrieval of annotated OTUs from paired-end reads using CD-HIT utilities. - Yulia Kondratenko; Anton I. Korobeynikov; Alla L. Lapidus (BMC Bioinform., 2020)

Correction to: CDSnake: Snakemake pipeline for retrieval of annotated OTUs from paired-end reads using CD-HIT utilities. - Yulia Kondratenko; Anton I. Korobeynikov; Alla L. Lapidus (BMC Bioinform., 2020)

MGnify: the microbiome analysis resource in 2020. - Alex L. Mitchell; Alexandre Almeida; Martin Beracochea; Miguel A. Boland; Josephine Burgin; Guy Cochrane; Michael R. Crusoe; Varsha Kale; Simon C. Potter; Lorna J. Richardson; Ekaterina A. Sakharova; Maxim Scheremetjew; et al. (Nucleic Acids Res., 2020)

coronaSPAdes: from biosynthetic gene clusters to RNA viral assemblies. - Dmitry Meleshko; Iman Hajirasouliha; Anton I. Korobeynikov (Bioinform., 2021)

MGnify: the microbiome sequence data analysis resource in 2023. - Lorna J. Richardson; Ben Allen; Germana Baldi; Martin Beracochea; Maxwell L. Bileschi; Tony Burdett; Josephine Burgin; Juan Caballero; Guy Cochrane; Lucy J. Colwell; Tom Curtis; Alejandra Escobar-Zepeda; et al. (Nucleic Acids Res., 2023)