GeneRAGE: a robust algorithm for sequence clustering and domain detection. - Anton J. Enright; Christos A. Ouzounis (Bioinform., 2000)

CAST: an iterative algorithm for the complexity analysis of sequence tracts. - Vasilis J. Promponas; Anton J. Enright; Sophia Tsoka; David P. Kreil; Christophe Leroy; Stavros J. Hamodrakas; Chris Sander; Christos A. Ouzounis (Bioinform., 2000)

TEXTQUEST: Document Clustering of MEDLINE Abstracts For Concept Discovery In Molecular Biology. - Ioannis Iliopoulos; Anton J. Enright; Christos A. Ouzounis (Pacific Symposium on Biocomputing, 2001)

Transcription-associated protein families are primarily taxon-specific. - Richard M. R. Coulson; Anton J. Enright; Christos A. Ouzounis (Bioinform., 2001)

BioLayout-an automatic graph layout algorithm for similarity visualization. - Anton J. Enright; Christos A. Ouzounis (Bioinform., 2001)

Evaluation of annotation strategies using an entire genome sequence. - Ioannis Iliopoulos; Sophia Tsoka; Miguel A. Andrade; Anton J. Enright; Mark Carroll; Patrick Poullet; Vasilis J. Promponas; Theodore Liakopoulos; Giorgos Palaios; Claude Pasquier; Stavros J. Hamodrakas; Javier Tamames; et al. (Bioinform., 2003)

COmplete GENome Tracking (COGENT): A Flexible Data Environment for Computational Genomics. - Paul J. Janssen; Anton J. Enright; Benjamin Audit; Ildefonso Cases; Leon Goldovsky; Nicola Harte; Victor Kunin; Christos A. Ouzounis (Bioinform., 2003)

CoGenT++: an extensive and extensible data environment for computational genomics. - Leon Goldovsky; Paul J. Janssen; Dag G. Ahrén; Benjamin Audit; Ildefonso Cases; Nikos Darzentas; Anton J. Enright; Núria López-Bigas; José M. Peregrín-Alvarez; Mike Smith 001; Sophia Tsoka; Victor Kunin; et al. (Bioinform., 2005)

MagicMatch - cross-referencing sequence identifiers across databases. - Mike Smith 001; Victor Kunin; Leon Goldovsky; Anton J. Enright; Christos A. Ouzounis (Bioinform., 2005)

miRBase: microRNA sequences, targets and gene nomenclature. - Sam Griffiths-Jones; Russell J. Grocock; Stijn van Dongen; Alex Bateman; Anton J. Enright (Nucleic Acids Res., 2006)

Construction, Visualisation, and Clustering of Transcription Networks from Microarray Expression Data. - Tom C. Freeman; Leon Goldovsky; Markus Brosch; Stijn van Dongen; Pierre Mazière; Russell J. Grocock; Shiri Freilich; Janet M. Thornton; Anton J. Enright (PLoS Comput. Biol., 2007)

A logic-based diagram of signalling pathways central to macrophage activation. - Sobia Raza; Kevin A. Robertson; Paul A. Lacaze; David Page; Anton J. Enright; Peter Ghazal; Tom C. Freeman (BMC Syst. Biol., 2008)

miRBase: tools for microRNA genomics. - Sam Griffiths-Jones; Harpreet Kaur Saini; Stijn van Dongen; Anton J. Enright (Nucleic Acids Res., 2008)

SylArray: a web server for automated detection of miRNA effects from expression data. - Nenad Bartonicek; Anton J. Enright (Bioinform., 2010)

iMotifs: an integrated sequence motif visualization and analysis environment. - Matias Piipari; Thomas A. Down; Harpreet Kaur Saini; Anton J. Enright; Tim J. P. Hubbard (Bioinform., 2010)

MapMi: automated mapping of microRNA loci. - José Afonso Guerra-Assunção; Anton J. Enright (BMC Bioinform., 2010)

Metric distances derived from cosine similarity and Pearson and Spearman correlations - Stijn van Dongen; Anton J. Enright (CoRR, 2012)

Visualisation of BioPAX Networks using BioLayout Express3D. - Derek W. Wright; Tim Angus; Anton J. Enright; Tom C. Freeman (F1000Research, 2014)

Chimira: analysis of small RNA sequencing data and microRNA modifications. - Dimitrios M. Vitsios; Anton J. Enright (Bioinform., 2015)

spongeScan: A web for detecting microRNA binding elements in lncRNA sequences. - Pedro Furió-Tarí; Sonia Tarazona; Toni Gabaldón; Anton J. Enright; Ana Conesa (Nucleic Acids Res., 2016)

Locating patterns in Nanopore currents using time-warped signal representation of consensus nucleotides for demultiplexing and motif detection. - Albert S. W. Kang; Anton J. Enright (EMBC, 2020)

CGG toolkit: Software components for computational genomics. - Dimitrios Vasileiou; Christos Karapiperis; Ismini Baltsavia; Anastasia Chasapi; Dag G. Ahrén; Paul J. Janssen; Ioannis Iliopoulos; Vasilis J. Promponas; Anton J. Enright; Christos A. Ouzounis (PLoS Comput. Biol., 2023)