Efficiency, Selectivity, and Robustness of Nucleocytoplasmic Transport. - Anton Zilman; Stefano Di Talia; Brian T. Chait; Michael P. Rout; Marcelo O. Magnasco (PLoS Comput. Biol., 2007)

Enhancement of Transport Selectivity through Nano-Channels by Non-Specific Competition. - Anton Zilman; Stefano Di Talia; Tijana Jovanovic-Talisman; Brian T. Chait; Michael P. Rout; Marcelo O. Magnasco (PLoS Comput. Biol., 2010)

On the mapping between Hopfield networks and Restricted Boltzmann Machines. - Matthew Smart; Anton Zilman (ICLR, 2021)

Spatial exclusion leads to "tug-of-war" ecological dynamics between competing species within microchannels. - Jeffrey J. Rothschild; Tianyi Ma; Joshua N. Milstein; Anton Zilman (PLoS Comput. Biol., 2023)

Elucidating Mechanics of T-cell Signaling: Modelling Surface Receptor Pathways Using Artificial Neural Networks. - Julie Midroni; Duncan Kirby; Anton Zilman (AIME (1), 2025)

Specificity and tunability of efflux pumps: A new role for the proton gradient? - Matthew Gerry; Duncan Kirby; Boian S. Alexandrov; Dvira Segal; Anton Zilman (PLoS Comput. Biol., 2025)