'Brukin2D': a 2D visualization and comparison tool for LC-MS data. - Dimosthenis Tsagkrasoulis; Panagiotis Zerefos; George Loudos; Antonia Vlahou; Marc Baumann; Sophia Kossida (BMC Bioinform., 2009)

Proteomic Feature Maps: A new visualization approach in proteomics analysis. - Eugenia G. Giannopoulou; Spiros D. Garbis; Antonia Vlahou; Sofia Kossida; George Lepouras; Elias S. Manolakos (J. Biomed. Informatics, 2009)

Protein spot detection in 2D-GE images using morphological operators. - Eleftheria A. Mylona; Michalis A. Savelonas; Dimitris Maroulis; Antonia Vlahou; Manousos Makridakis (CBMS, 2010)

Addressing the Challenge of Defining Valid Proteomic Biomarkers and Classifiers. - Mohammed Dakna; Keith Harris; Alexandros Kalousis; Sebastien Carpentier; Walter Kolch; Joost P. Schanstra; Marion Haubitz; Antonia Vlahou; Harald Mischak; Mark A. Girolami (BMC Bioinform., 2010)

2D-GE image analysis focusing on elimination of spurious spots. - Eirini Kostopoulou; Eleni Zacharia; Dimitris Maroulis; Antonia Vlahou (ICPR, 2012)

A combinatorial approach of Proteomics and Systems Biology in unravelling the mechanisms of acute kidney injury (AKI): involvement of NMDA receptor GRIN1 in murine AKI. - Holger Husi; Maria Sanchez-Niño; Christian Delles; William Mullen; Antonia Vlahou; Alberto Ortiz Arduan; Harald Mischak (BMC Syst. Biol., 2013)

PeptiCKDdb - peptide- and protein-centric database for the investigation of genesis and progression of chronic kidney disease. - Magdalena Krochmal; Marco Fernandes; Szymon Filip; Claudia Pontillo; Holger Husi; Jerome Zoidakis; Harald Mischak; Antonia Vlahou; Joachim Jankowski (Database J. Biol. Databases Curation, 2016)