Testing Disjointness of Private Datasets. - Aggelos Kiayias; Antonina Mitrofanova (Financial Cryptography, 2005)

Syntax-Driven Private Evaluation of Quantified Membership Queries. - Aggelos Kiayias; Antonina Mitrofanova (ACNS, 2006)

Systems Biology via Redescription and Ontologies (III): Protein Classification Using Malaria Parasite's Temporal Transcriptomic Profiles. - Antonina Mitrofanova; Samantha Kleinberg; Jane Carlton; Simon Kasif; Bud Mishra (BIBM, 2008)

Integrative Protein Function Transfer Using Factor Graphs and Heterogeneous Data Sources. - Antonina Mitrofanova; Vladimir Pavlovic 001; Bud Mishra (BIBM, 2008)

Population genetics of human copy number variations: models and simulation of their evolution along and across the genomes. - Antonina Mitrofanova; Bud Mishra (SAC, 2008)

Efficient and Robust Prediction Algorithms for Protein Complexes Using Gomory-Hu Trees. - Antonina Mitrofanova; Martin Farach-Colton; Bud Mishra (Pacific Symposium on Biocomputing, 2009)

Efficient Systems Biology Algorithms for Biological Networks over Multiple Time-Scales: From Evolutionary to Regulatory Time. - Antonina Mitrofanova (2009)

Predicting malaria interactome classifications from time-course transcriptomic data along the intraerythrocytic developmental cycle. - Antonina Mitrofanova; Samantha Kleinberg; Jane Carlton; Simon Kasif; Bud Mishra (Artif. Intell. Medicine, 2010)

On a novel coalescent model for genome-wide evolution of Copy Number Variations. - Antonina Mitrofanova; Bud Mishra (Int. J. Data Min. Bioinform., 2010)

Prediction of Protein Functions with Gene Ontology and Interspecies Protein Homology Data. - Antonina Mitrofanova; Vladimir Pavlovic 001; Bud Mishra (IEEE ACM Trans. Comput. Biol. Bioinform., 2011)