ArchDB: automated protein loop classification as a tool for structural genomics. - Jordi Espadaler; Narcis Fernandez-Fuentes; Antonio Hermoso; Enrique Querol; Francesc X. Avilés; Michael J. E. Sternberg; Baldomero Oliva (Nucleic Acids Res., 2004)

TrSDB: a proteome database of transcription factors. - Antonio Hermoso; Daniel Aguilar; Francesc X. Avilés; Enrique Querol (Nucleic Acids Res., 2004)

The Plant Resistance Gene Database (PRGdb): a Wiki-based system for the annotation of R-genes. - Antonio Hermoso; Anna V. Vlasova; Walter Sanseverino; Raffaella D'Alessandro; Giuseppe Andolfo; Luigi Frusciante; Guglielmo Roma; Maria Raffaella Ercolano; Ernesto Lowy-Gallego (IWBBIO, 2013)

PRGdb 2.0: towards a community-based database model for the analysis of R-genes in plants. - Walter Sanseverino; Antonio Hermoso; Raffaella D'Alessandro; Anna V. Vlasova; Giuseppe Andolfo; Luigi Frusciante; Ernesto Lowy-Gallego; Guglielmo Roma; Maria Raffaella Ercolano (Nucleic Acids Res., 2013)

SuperFly: a comparative database for quantified spatio-temporal gene expression patterns in early dipteran embryos. - Damjan Cicin-Sain; Antonio Hermoso Pulido; Anton Crombach; Karl R. Wotton; Eva Jiménez-Guri; Jean-François Taly; Guglielmo Roma; Johannes Jaeger (Nucleic Acids Res., 2015)

MyMpn: a database for the systems biology model organism Mycoplasma pneumoniae. - Judith A. H. Wodke; Andreu Alibés; Luca Cozzuto; Antonio Hermoso; Eva Yus; Maria Lluch-Senar; Luis Serrano; Guglielmo Roma (Nucleic Acids Res., 2015)

GREENC: a Wiki-based database of plant lncRNAs. - Andreu Paytuví Gallart; Antonio Hermoso Pulido; Irantzu Anzar Martínez de Lagrán; Walter Sanseverino; Riccardo Aiese Cigliano (Nucleic Acids Res., 2016)

Scalable Design of Paired CRISPR Guide RNAs for Genomic Deletion. - Carlos Pulido-Quetglas; Estel Aparicio-Prat; Carme Arnan; Taisia Polidori; Toni Hermoso; Emilio Palumbo; Julia V. Ponomarenko; Roderic Guigó; Rory Johnson (PLoS Comput. Biol., 2017)

Pergola-web: a web server for the visualization and analysis of longitudinal behavioral data using repurposed genomics tools and standards. - Jose Espinosa-Carrasco; Antonio Hermoso Pulido; Ionas Erb; Mara Dierssen; Julia V. Ponomarenko; Cédric Notredame (Nucleic Acids Res., 2019)

Simple Wikidata Analysis for Tracking and Improving Biographies in Catalan Wikipedia. - Toni Hermoso Pulido (WWW (Companion Volume), 2021)