Comparative analysis of the performance of commonly available density functionals in the determination of geometrical parameters for copper complexes. - Sérgio Filipe Sousa; Gaspar R. P. Pinto; António J. M. Ribeiro; João T. S. Coimbra; Pedro Alexandrino Fernandes; Maria João Ramos (J. Comput. Chem., 2013)

Transform-MinER: transforming molecules in enzyme reactions. - Jonathan D. Tyzack; António J. M. Ribeiro; Neera Borkakoti; Janet M. Thornton (Bioinform., 2018)

Mechanism and Catalytic Site Atlas (M-CSA): a database of enzyme reaction mechanisms and active sites. - António J. M. Ribeiro; Gemma L. Holliday; Nicholas Furnham; Jonathan D. Tyzack; Katherine Ferris; Janet M. Thornton (Nucleic Acids Res., 2018)

GRaSP: a graph-based residue neighborhood strategy to predict binding sites. - Charles Abreu Santana; Sabrina de Azevedo Silveira; João P. A. Moraes; Sandro C. Izidoro; Raquel Cardoso de Melo Minardi; António J. M. Ribeiro; Jonathan D. Tyzack; Neera Borkakoti; Janet M. Thornton (Bioinform., 2020)

PDBe-KB: a community-driven resource for structural and functional annotations. - Mihaly Varadi; John M. Berrisford; Mandar S. Deshpande; Sreenath Nair; Aleksandras Gutmanas; David R. Armstrong; Lukás Pravda; Bissan Al-Lazikani; Stephen Anyango; Geoffrey J. Barton; Karel Berka; Tom L. Blundell; et al. (Nucleic Acids Res., 2020)

GRaSP-web: a machine learning strategy to predict binding sites based on residue neighborhood graphs. - Charles Abreu Santana; Sandro C. Izidoro; Raquel Cardoso de Melo Minardi; Jonathan D. Tyzack; António J. M. Ribeiro; Douglas E. V. Pires; Janet M. Thornton; Sabrina de Azevedo Silveira (Nucleic Acids Res., 2022)