Understanding the Binding Specificity of G-Protein Coupled Receptors toward G-Proteins and Arrestins: Application to the Dopamine Receptor Family. - António J. Preto; Carlos A. V. Barreto; Salete J. Baptista; José G. de Almeida; Agostinho Lemos; André Melo; M. Natália Dias Soeiro Cordeiro; Zeynep Kurkcuoglu; Rita Melo; Irina S. Moreira (J. Chem. Inf. Model., 2020)

Predicting Hot Spots Using a Deep Neural Network Approach. - António J. Preto; Pedro Matos-Filipe; José G. de Almeida; Joana Mourão; Irina S. Moreira (Artificial Neural Networks, 3rd Edition, 2021)

MENSAdb: a thorough structural analysis of membrane protein dimers. - Pedro Matos-Filipe; António J. Preto; Panagiotis I. Koukos; Joana Mourão; Alexandre M. J. J. Bonvin; Irina S. Moreira (Database J. Biol. Databases Curation, 2021)

DrugTax: package for drug taxonomy identification and explainable feature extraction. - António J. Preto; Paulo C. Correia; Irina S. Moreira (J. Cheminformatics, 2022)

DELFOS - drug efficacy leveraging forked and specialized networks - benchmarking scRNA-seq data in multi-omics-based prediction of cancer sensitivity. - Luiz Felipe Piochi; António J. Preto; Irina S. Moreira (Bioinform., 2023)

Evaluating the generalizability of graph neural networks for predicting collision cross section. - Chloe Engler Hart; António J. Preto; Shaurya Chanana; David Healey; Tobias Kind; Daniel Domingo-Fernández (J. Cheminformatics, 2024)

POSEIDON: Peptidic Objects SEquence-based Interaction with cellular DOmaiNs: a new database and predictor. - António J. Preto; Ana B. Caniceiro; Francisco Duarte; Hugo Fernandes; Lino Ferreira; Joana Mourão; Irina S. Moreira (J. Cheminformatics, 2024)