iRefR: an R package to manipulate the iRefIndex consolidated protein interaction database. - Antonio Mora; Ian M. Donaldson (BMC Bioinform., 2011)

iRefScape. A Cytoscape plug-in for visualization and data mining of protein interaction data from iRefIndex. - Sabry Razick; Antonio Mora; Katerina Michalickova; Paul Boddie; Ian M. Donaldson (BMC Bioinform., 2011)

Effects of protein interaction data integration, representation and reliability on the use of network properties for drug target prediction. - Antonio Mora; Ian M. Donaldson (BMC Bioinform., 2012)

A survey of protein interaction data and multigenic inherited disorders. - Antonio Mora; Katerina Michalickova; Ian M. Donaldson (BMC Bioinform., 2013)

In the loop: promoter-enhancer interactions and bioinformatics. - Antonio Mora; Geir Kjetil Sandve; Odd Stokke Gabrielsen; Ragnhild Eskeland (Briefings Bioinform., 2016)

Epigenetically driven network cooperativity: meta-analysis in multi-drug resistant osteosarcoma. - Antonio Mora; Monia Taranta; Nazar Zaki; Caterina Cinti; Enrico Capobianco (J. Complex Networks, 2016)

Gene set analysis methods for the functional interpretation of non-mRNA data - Genomic range and ncRNA data. - Antonio Mora (Briefings Bioinform., 2020)

GREG - studying transcriptional regulation using integrative graph databases. - Songqing Mei; Xiaowei Huang; Chengshu Xie; Antonio Mora (Database J. Biol. Databases Curation, 2020)

Popularity and performance of bioinformatics software: the case of gene set analysis. - Chengshu Xie; Shaurya Jauhari; Antonio Mora (BMC Bioinform., 2021)

Artificial Intelligence Applied to Counterfeit Websites Detection. - Mohammad Ghattas; Antonio Mora; Suhail Odeh; Mahmoud Obaid (ISAmI, 2024)