Understanding the role of the topology in protein folding by computational inverse folding experiments. - Antonio Mucherino; Susan Costantini; Daniela di Serafino; Marco D'Apuzzo; Angelo M. Facchiano; Giovanni Colonna (Comput. Biol. Chem., 2008)

The Molecular Distance Geometry Problem Applied to Protein Conformations. - Antonio Mucherino; Carlile Lavor; Nelson Maculan (CTW, 2009)

Comparisons between an exact and a metaheuristic algorithm for the molecular distance geometry problem. - Antonio Mucherino; Leo Liberti; Carlile Lavor; Nelson Maculan (GECCO, 2009)

Computing artificial backbones of hydrogen atoms in order to discover protein backbones. - Carlile Lavor; Antonio Mucherino; Leo Liberti; Nelson Maculan (IMCSIT, 2009)

On a discretizable subclass of instances of the molecular distance geometry problem. - Carlile Lavor; Leo Liberti; Antonio Mucherino; Nelson Maculan (SAC, 2009)

A survey of data mining techniques applied to agriculture. - Antonio Mucherino; Petraq Papajorgji; Panos M. Pardalos (Oper. Res., 2009)

A parallel version of the Branch & Prune algorithm for the Molecular Distance Geometry Problem. - Antonio Mucherino; Carlile Lavor; Leo Liberti; El-Ghazali Talbi (AICCSA, 2010)

On the solution of molecular distance geometry problems with interval data. - Carlile Lavor; Leo Liberti; Antonio Mucherino (BIBM Workshops, 2010)

MD-jeep: An Implementation of a Branch and Prune Algorithm for Distance Geometry Problems. - Antonio Mucherino; Leo Liberti; Carlile Lavor (ICMS, 2010)

Consistent Biclustering and Applications to Agriculture. - Antonio Mucherino; Alejandra Urtubia (ICDM (Workshops), 2010)

A New Heuristic for Feature Selection by Consistent Biclustering - Antonio Mucherino; Sonia Cafieri (CoRR, 2010)

A symmetry-driven BP algorithm for the Discretizable Molecular Distance Geometry Problem. - Antonio Mucherino; Carlile Lavor; Leo Liberti (BIBM Workshops, 2011)

On the Number of Solutions of the Discretizable Molecular Distance Geometry Problem. - Leo Liberti; Benoît Masson; Jon Lee 001; Carlile Lavor; Antonio Mucherino (COCOA, 2011)

Branch-and-Prune trees with bounded width. - Leo Liberti; Benoît Masson; Carlile Lavor; Antonio Mucherino (CTW, 2011)

Sparsifying Distance Matrices for Protein-Protein Structure Alignments. - Antonio Mucherino; Inken Wohlers; Gunnar W. Klau; Rumen Andonov (CTW, 2011)

Extending the definition of beta-consistent biclustering for feature selection. - Antonio Mucherino (FedCSIS, 2011)

Recent Developments in Data Mining and Agriculture. - Antonio Mucherino; Georg Ruß (ICDM (Workshops), 2011)

Variable Neighborhood Search for Robust Optimization and Applications to Aerodynamics. - Antonio Mucherino; Martin Fuchs; Xavier Vasseur; Serge Gratton (LSSC, 2011)

Influence of Pruning Devices on the Solution of Molecular Distance Geometry Problems. - Antonio Mucherino; Carlile Lavor; Therese E. Malliavin; Leo Liberti; Michael Nilges; Nelson Maculan (SEA, 2011)

Polynomial cases of the Discretizable Molecular Distance Geometry Problem - Leo Liberti; Carlile Lavor; Benoît Masson; Antonio Mucherino (CoRR, 2011)

Molecular distance geometry methods: from continuous to discrete. - Leo Liberti; Carlile Lavor; Antonio Mucherino; Nelson Maculan (Int. Trans. Oper. Res., 2011)

On the computation of protein backbones by using artificial backbones of hydrogens. - Carlile Lavor; Antonio Mucherino; Leo Liberti; Nelson Maculan (J. Glob. Optim., 2011)

On suitable orders for discretizing Molecular Distance Geometry Problems related to protein side chains. - Virginia Costa; Antonio Mucherino; Carlile Lavor; Luiz Mariano Carvalho; Nelson Maculan (FedCSIS, 2012)

A Parallel BP Algorithm for the Discretizable Distance Geometry Problem. - Warley Gramacho; Antonio Mucherino; Carlile Lavor; Nelson Maculan (IPDPS Workshops, 2012)

The discretizable molecular distance geometry problem. - Carlile Lavor; Leo Liberti; Nelson Maculan; Antonio Mucherino (Comput. Optim. Appl., 2012)

Recent advances on the Discretizable Molecular Distance Geometry Problem. - Carlile Lavor; Leo Liberti; Nelson Maculan; Antonio Mucherino (Eur. J. Oper. Res., 2012)

Exploiting Symmetry Properties of the Discretizable molecular Distance Geometry Problem. - Antonio Mucherino; Carlile Lavor; Leo Liberti (J. Bioinform. Comput. Biol., 2012)

Discretization orders for distance geometry problems. - Carlile Lavor; Jon Lee 001; Audrey Lee-St. John; Leo Liberti; Antonio Mucherino; Maxim Sviridenko (Optim. Lett., 2012)

The discretizable distance geometry problem. - Antonio Mucherino; Carlile Lavor; Leo Liberti (Optim. Lett., 2012)

The Discretizable Molecular Distance Geometry Problem seems Easier on Proteins. - Leo Liberti; Carlile Lavor; Antonio Mucherino (Distance Geometry, 2013)

Distance Geometry in Structural Biology: New Perspectives. - Thérèse E. Malliavin; Antonio Mucherino; Michael Nilges (Distance Geometry, 2013)

Energy-based Pruning Devices for the BP Algorithm applied to Distance Geometry. - Douglas Soares Gonçalves; Antonio Mucherino; Carlile Lavor (FedCSIS, 2013)

On the Identification of Discretization Orders for Distance Geometry with Intervals. - Antonio Mucherino (GSI, 2013)

The integration of Clifford Algebra in the iBP algorithm for the DMDGP. - Rafael Alves; Andrea Cassioli; Antonio Mucherino; Carlile Lavor; Leo Liberti (IWBBIO, 2013)

The interval Branch-and-Prune algorithm for the discretizable molecular distance geometry problem with inexact distances. - Carlile Lavor; Leo Liberti; Antonio Mucherino (J. Glob. Optim., 2013)

A VNS-Based Heuristic for Feature Selection in Data Mining. - Antonio Mucherino; Leo Liberti (Hybrid Metaheuristics, 2013)

An adaptive branching scheme for the Branch & Prune algorithm applied to Distance Geometry. - Douglas Soares Gonçalves; Antonio Mucherino; Carlile Lavor (FedCSIS, 2014)

On the number of realizations of certain Henneberg graphs arising in protein conformation. - Leo Liberti; Benoît Masson; Jon Lee 001; Carlile Lavor; Antonio Mucherino (Discret. Appl. Math., 2014)

Discretization orders for protein side chains. - Virginia Costa; Antonio Mucherino; Carlile Lavor; Andrea Cassioli; Luiz Mariano Carvalho; Nelson Maculan (J. Glob. Optim., 2014)

Discretization orders and efficient computation of cartesian coordinates for distance geometry. - Douglas Soares Gonçalves; Antonio Mucherino (Optim. Lett., 2014)

Euclidean Distance Geometry and Applications. - Leo Liberti; Carlile Lavor; Nelson Maculan; Antonio Mucherino (SIAM Rev., 2014)

BetaMDGP: Protein Structure Determination Algorithm Based on the Beta-complex. - Jeongyeon Seo; Jae-Kwan Kim 001; Joonghyun Ryu; Carlile Lavor; Antonio Mucherino; Deok-Soo Kim (Trans. Comput. Sci., 2014)

Ant Colony Optimization with environment changes: An application to GPS surveying. - Antonio Mucherino; Stefka Fidanova; Maria Ganzha (FedCSIS, 2015)

A Pseudo de Bruijn Graph Representation for Discretization Orders for Distance Geometry. - Antonio Mucherino (IWBBIO (1), 2015)

Optimal Discretization Orders for Distance Geometry: A Theoretical Standpoint. - Antonio Mucherino (LSSC, 2015)

An algorithm to enumerate all possible protein conformations verifying a set of distance constraints. - Andrea Cassioli; Benjamin Bardiaux; Guillaume Bouvier; Antonio Mucherino; Rafael Alves; Leo Liberti; Michael Nilges; Carlile Lavor; Thérèse E. Malliavin (BMC Bioinform., 2015)

Preface. - Antonio Mucherino; Rosiane de Freitas Rodrigues; Carlile Lavor (Discret. Appl. Math., 2015)

InterCriteria Analysis of Ant Algorithm with Environment Change for GPS Surveying Problem. - Stefka Fidanova; Olympia Roeva; Antonio Mucherino; Kristina G. Kapanova (AIMSA, 2016)

A New Approach to the Discretization of Multidimensional Scaling. - Antonio Mucherino; Warley Gramacho; Jung-Hsin Lin; Carlile Lavor (FedCSIS, 2016)

Assigned and unassigned distance geometry: applications to biological molecules and nanostructures. - Simon J. L. Billinge; Phillip M. Duxbury; Douglas Soares Gonçalves; Carlile Lavor; Antonio Mucherino (4OR, 2016)

Optimal partial discretization orders for discretizable distance geometry. - Douglas Soares Gonçalves; Antonio Mucherino (Int. Trans. Oper. Res., 2016)

A Distance-Based Approach for Human Posture Simulations. - Antonio Mucherino; Douglas Soares Gonçalves; Antonin Bernardin; Ludovic Hoyet; Franck Multon (FedCSIS, 2017)

An Approach to Dynamical Distance Geometry. - Antonio Mucherino; Douglas Soares Gonçalves (GSI, 2017)

Normalized Euclidean distance matrices for human motion retargeting. - Antonin Bernardin; Ludovic Hoyet; Antonio Mucherino; Douglas Soares Gonçalves; Franck Multon (MIG, 2017)

Recent advances on the interval distance geometry problem. - Douglas Soares Gonçalves; Antonio Mucherino; Carlile Lavor; Leo Liberti (J. Glob. Optim., 2017)

On the Discretization of Distance Geometry: Theory, Algorithms and Applications. - Antonio Mucherino (2018)

Feature Selection in Time-Series Motion Databases. - Antonio Mucherino; Florian Elain; Ludovic Hoyet; Richard Kulpa (FedCSIS, 2018)

Surface based motion retargeting by preserving spatial relationship. - Zhiguang Liu; Antonio Mucherino; Ludovic Hoyet; Franck Multon (MIG, 2018)

Recent results on assigned and unassigned distance geometry with applications to protein molecules and nanostructures. - Simon J. L. Billinge; Phillip M. Duxbury; Douglas Soares Gonçalves; Carlile Lavor; Antonio Mucherino (Ann. Oper. Res., 2018)

A symmetry-based splitting strategy for discretizable distance geometry problems. - Felipe Fidalgo; Douglas Soares Gonçalves; Carlile Lavor; Leo Liberti; Antonio Mucherino (J. Glob. Optim., 2018)

An Efficient Exhaustive Search for the Discretizable Distance Geometry Problem with Interval Data. - Antonio Mucherino; Jung-Hsin Lin (FedCSIS, 2019)

A Coarse-Grained Representation for Discretizable Distance Geometry with Interval Data. - Antonio Mucherino; Jung-Hsin Lin; Douglas Soares Gonçalves (IWBBIO (1), 2019)

DSPP: Deep Shape and Pose Priors of Humans. - Shanfeng Hu; Hubert P. H. Shum; Antonio Mucherino (MIG, 2019)

Systematic Exploration of Protein Conformational Space Using a Distance Geometry Approach. - Thérèse E. Malliavin; Antonio Mucherino; Carlile Lavor; Leo Liberti (J. Chem. Inf. Model., 2019)

An Analysis on the Degrees of Freedom of Binary Representations for Solutions to Discretizable Distance Geometry Problems. - Antonio Mucherino (WCO@FedCSIS, 2020)

MD-jeep: a New Release for Discretizable Distance Geometry Problems with Interval Data. - Antonio Mucherino; Douglas Soares Gonçalves; Leo Liberti; Jung-Hsin Lin; Carlile Lavor; Nelson Maculan (FedCSIS, 2020)

The K-discretization and K-incident graphs for discretizable Distance Geometry. - Germano Abud; Jorge Alencar; Carlile Lavor; Leo Liberti; Antonio Mucherino (Optim. Lett., 2020)

Preface: Special issue on distances in optimization and graphs dedicated to the memory of Michel Deza. - Antonio Mucherino; Carlile Lavor (Optim. Lett., 2020)

An application-based characterization of dynamical distance geometry problems. - Antonio Mucherino; Jérémy Omer; Ludovic Hoyet; Paolo Robuffo Giordano; Franck Multon (Optim. Lett., 2020)

A study on the impact of the distance types involved in protein structure determination by NMR. - Simon B. Hengeveld; Therese E. Malliavin; J. H. Lin; Leo Liberti; Antonio Mucherino (BIBM, 2021)

On the Representation of Human Motions and Distance-based Retargeting. - Simon B. Hengeveld; Antonio Mucherino (FedCSIS, 2021)

A Linear Program for Points of Interest Relocation in Adaptive Maps. - Simon B. Hengeveld; F. Plastria; Antonio Mucherino; David A. Pelta (GSI (2), 2021)

binMeta: A New Java Package for Meta-heuristic Searches. - Antonio Mucherino (LSSC, 2021)

Improving the sampling process in the interval Branch-and-Prune algorithm for the discretizable molecular distance geometry problem. - Carlile Lavor; Michael Souza 001; Luiz Mariano Carvalho; Douglas Soares Gonçalves; Antonio Mucherino (Appl. Math. Comput., 2021)

Solving the One-dimensional Distance Geometry Problem by Optical Computing. - Simon B. Hengeveld; N. Rubiano da Silva; Douglas Soares Gonçalves; Paulo H. Souto Ribeiro; Antonio Mucherino (CoRR, 2021)

An impossible utopia in distance geometry. - Germano Abud; Jorge Alencar; Carlile Lavor; Leo Liberti; Antonio Mucherino (CoRR, 2021)

The Referenced Vertex Ordering Problem: Theory, Applications, and Solution Methods. - Jérémy Omer; Antonio Mucherino (Open J. Math. Optim., 2021)

On the Feasible Regions Delimiting Natural Human Postures in a Novel Skeletal Representation. - Simon B. Hengeveld; Antonio Mucherino (FedCSIS, 2022)

A GPU approach to distance geometry in 1D: an implementation in C/CUDA. - Simon B. Hengeveld; Antonio Mucherino (FedCSIS, 2022)

A Distance Geometry Procedure Using the Levenberg-Marquardt Algorithm and with Applications in Biology but Not only. - Douglas Soares Gonçalves; Antonio Mucherino (IWBBIO (2), 2022)

Preface: special issue on optimization in distance geometry. - Andrés D. Báez-Sánchez; Carlile Lavor; Antonio Mucherino (J. Glob. Optim., 2022)

The Coherent Multi-representation Problem for Protein Structure Determination. - Antonio Mucherino; Jung-Hsin Lin (DIS, 2023)

The Coherent Multi-representation Problem with Applications in Structural Biology. - Antonio Mucherino (IWBBIO (1), 2023)

Variable Neighborhood Search in Hamming Space. - Simon B. Hengeveld; Antonio Mucherino (LSSC, 2023)

Impact of Local Geometry on Methods for Constructing Protein Conformations. - Wagner Rocha; Therese E. Malliavin; Antonio Mucherino; Leo Liberti (FedCSIS, 2024)

An impossible combinatorial counting method in distance geometry. - Germano Abud; Jorge Alencar; Carlile Lavor; Leo Liberti; Antonio Mucherino (Discret. Appl. Math., 2024)

Influence of Stereochemistry in a Local Approach for Calculating Protein Conformations. - Wagner Rocha; Leo Liberti; Antonio Mucherino; Thérèse E. Malliavin (J. Chem. Inf. Model., 2024)