ngsCAT: a tool to assess the efficiency of targeted enrichment sequencing. - Francisco J. López-Domingo; Javier Perez-Florido; Antonio Rueda; Joaquín Dopazo; Javier Santoyo-Lopez (Bioinform., 2014)

DNA clustering and genome complexity. - Francisco Dios; Guillermo Barturen; Ricardo Lebrón; Antonio Rueda; Michael Hackenberg; José L. Oliver (Comput. Biol. Chem., 2014)

sRNAtoolbox: an integrated collection of small RNA research tools. - Antonio Rueda; Guillermo Barturen; Ricardo Lebrón; Cristina Gómez-Martín; Ángel M. Alganza; José L. Oliver; Michael Hackenberg (Nucleic Acids Res., 2015)

HGVA: the Human Genome Variation Archive. - Javier López; Jacobo Coll; Matthias Haimel; Swaathi Kandasamy; Joaquín Tárraga; Pedro Furió-Tarí; Wasim Bari; Marta Bleda; Antonio Rueda; Stefan Gräf; Augusto Rendon; Joaquín Dopazo; et al. (Nucleic Acids Res., 2017)

sRNAbench and sRNAtoolbox 2019: intuitive fast small RNA profiling and differential expression. - Ernesto Aparicio-Puerta; Ricardo Lebrón; Antonio Rueda; Cristina Gómez-Martín; Stavros Giannoukakos; David Jáspez; José María Medina; Andreja Zubkovic; Igor Jurak; Bastian Fromm; Juan Antonio Marchal; José L. Oliver; et al. (Nucleic Acids Res., 2019)