Insight into the Structure of Amyloid Fibrils from the Analysis of Globular Proteins. - Antonio Trovato; Fabrizio Chiti; Amos Maritan; Flavio Seno (PLoS Comput. Biol., 2006)

REPETITA: detection and discrimination of the periodicity of protein solenoid repeats by discrete Fourier transform. - Luca Marsella; Francesco Sirocco; Antonio Trovato; Flavio Seno; Silvio C. E. Tosatto (Bioinform., 2009)

A Condensation-Ordering Mechanism in Nanoparticle-Catalyzed Peptide Aggregation. - Stefan Auer; Antonio Trovato; Michele Vendruscolo (PLoS Comput. Biol., 2009)

Exploring the Universe of Protein Structures beyond the Protein Data Bank. - Pilar Cossio; Antonio Trovato; Fabio Pietrucci; Flavio Seno; Amos Maritan; Alessandro Laio (PLoS Comput. Biol., 2010)

BACHSCORE. A tool for evaluating efficiently and reliably the quality of large sets of protein structures. - Edoardo Sarti; Stefano Zamuner; Pilar Cossio; Alessandro Laio; Flavio Seno; Antonio Trovato (Comput. Phys. Commun., 2013)

PASTA 2.0: an improved server for protein aggregation prediction. - Ian Walsh; Flavio Seno; Silvio C. E. Tosatto; Antonio Trovato (Nucleic Acids Res., 2014)

Folding kinetics of an entangled protein. - Leonardo Salicari; Marco Baiesi; Enzo Orlandini; Antonio Trovato (PLoS Comput. Biol., 2023)

Reformulating regression test suite optimization using quantum annealing - an empirical study. - Antonio Trovato; Manuel De Stefano; Fabiano Pecorelli; Dario Di Nucci; Andrea De Lucia (Int. J. Softw. Tools Technol. Transf., 2024)

AMBER: AI-Enabled Java Microbenchmark Harness. - Antonio Trovato; Luca Traini; Federico Di Menna; Dario Di Nucci (ICST, 2025)

A Preliminary Investigation on the Usage of Quantum Approximate Optimization Algorithms for Test Case Selection. - Antonio Trovato; Martin Beseda; Dario Di Nucci (CoRR, 2025)