Unsupervised Learning of Shape Complexity: Application to Brain Development. - Ahmed Serag; Ioannis S. Gousias; Antonios Makropoulos; Paul Aljabar; Joseph V. Hajnal; James P. Boardman; Serena J. Counsell; Daniel Rueckert (STIA, 2012)

Regional changes in thalamic shape and volume with increasing age. - Emer J. Hughes; Jacqueline Bond; Patricia Svrckova; Antonios Makropoulos; Gareth Ball; David J. Sharp; A. David Edwards; Joseph V. Hajnal; Serena J. Counsell (NeuroImage, 2012)

Consistent and robust 4D whole-brain segmentation: Application to traumatic brain injury. - Christian Ledig; Wenzhe Shi; Antonios Makropoulos; Juha Koikkalainen; Rolf A. Heckemann; Alexander Hammers; Jyrki Lötjönen; Olli Tenovuo; Daniel Rueckert (ISBI, 2014)

Construction of a 4D Brain Atlas and Growth Model Using Diffeomorphic Registration. - Andreas Schuh; Maria Murgasova; Antonios Makropoulos; Christian Ledig; Serena J. Counsell; Joseph V. Hajnal; Paul Aljabar; Daniel Rueckert (STIA, 2014)

Resting State fMRI in the moving fetus: A robust framework for motion, bias field and spin history correction. - Giulio Ferrazzi; Maria Kuklisova-Murgasova; Tomoki Arichi; Christina Malamateniou; Matthew J. Fox; Antonios Makropoulos; Joanna M. Allsop; Mary A. Rutherford; Shaihan J. Malik; Paul Aljabar; Joseph V. Hajnal (NeuroImage, 2014)

Automatic Whole Brain MRI Segmentation of the Developing Neonatal Brain. - Antonios Makropoulos; Ioannis S. Gousias; Christian Ledig; Paul Aljabar; Ahmed Serag; Joseph V. Hajnal; A. David Edwards; Serena J. Counsell; Daniel Rueckert (IEEE Trans. Medical Imaging, 2014)

Evaluation of automatic neonatal brain segmentation algorithms: The NeoBrainS12 challenge. - Ivana Isgum; Manon J. N. L. Benders; Brian B. Avants; Manuel Jorge Cardoso; Serena J. Counsell; Elda Fischi Gomez; Laura Gui; Petra S. Hüppi; Karina J. Kersbergen; Antonios Makropoulos; Andrew Melbourne; Pim Moeskops; et al. (Medical Image Anal., 2015)

Robust whole-brain segmentation: Application to traumatic brain injury. - Christian Ledig; Rolf A. Heckemann; Alexander Hammers; Juan Carlos López; Virginia F. J. Newcombe; Antonios Makropoulos; Jyrki Lötjönen; David K. Menon; Daniel Rueckert (Medical Image Anal., 2015)

Construction of a fetal spatio-temporal cortical surface atlas from in utero MRI: Application of spectral surface matching. - Robert Wright; Antonios Makropoulos; Vanessa Kyriakopoulou; Prachi A. Patkee; Lisa M. Koch; Mary A. Rutherford; Joseph V. Hajnal; Daniel Rueckert; Paul Aljabar (NeuroImage, 2015)

Regional growth and atlasing of the developing human brain. - Antonios Makropoulos; Paul Aljabar; Robert Wright; Britta Hüning; Nazakat Merchant; Tomoki Arichi; Nora Tusor; Joseph V. Hajnal; A. David Edwards; Serena J. Counsell; Daniel Rueckert (NeuroImage, 2016)

A deformable model for the reconstruction of the neonatal cortex. - Andreas Schuh; Antonios Makropoulos; Robert Wright; Emma C. Robinson; Nora Tusor; Johannes K. Steinweg; Emer J. Hughes; Lucilio Cordero-Grande; Anthony N. Price; Jana Hutter; Joseph V. Hajnal; Daniel Rueckert (ISBI, 2017)

Reproducible Large-Scale Neuroimaging Studies with the OpenMOLE Workflow Management System. - Jonathan Passerat-Palmbach; Romain Reuillon; Mathieu Leclaire; Antonios Makropoulos; Emma C. Robinson; Sarah Parisot; Daniel Rueckert (Frontiers Neuroinformatics, 2017)

AutoDVT: Joint Real-Time Classification for Vein Compressibility Analysis in Deep Vein Thrombosis Ultrasound Diagnostics. - Ryutaro Tanno; Antonios Makropoulos; Salim Arslan; Ozan Oktay; Sven Mischkewitz; Fouad Al-Noor; Jonas Oppenheimer; Ramin Mandegaran; Bernhard Kainz; Mattias P. Heinrich (MICCAI (2), 2018)

Human brain mapping: A systematic comparison of parcellation methods for the human cerebral cortex. - Salim Arslan; Sofia Ira Ktena; Antonios Makropoulos; Emma C. Robinson; Daniel Rueckert; Sarah Parisot (NeuroImage, 2018)

Construction of a neonatal cortical surface atlas using Multimodal Surface Matching in the Developing Human Connectome Project. - Jelena Bozek; Antonios Makropoulos; Andreas Schuh; Sean P. Fitzgibbon; Robert Wright; Matthew F. Glasser; Timothy S. Coalson; Jonathan O'Muircheartaigh; Jana Hutter; Anthony N. Price; Lucilio Cordero-Grande; Rui Pedro A. G. Teixeira; et al. (NeuroImage, 2018)

A review on automatic fetal and neonatal brain MRI segmentation. - Antonios Makropoulos; Serena J. Counsell; Daniel Rueckert (NeuroImage, 2018)

The developing human connectome project: A minimal processing pipeline for neonatal cortical surface reconstruction. - Antonios Makropoulos; Emma C. Robinson; Andreas Schuh; Robert Wright; Sean P. Fitzgibbon; Jelena Bozek; Serena J. Counsell; Johannes K. Steinweg; Katy Vecchiato; Jonathan Passerat-Palmbach; Gregor Lenz; Filippo Mortari; et al. (NeuroImage, 2018)

Multimodal surface matching with higher-order smoothness constraints. - Emma C. Robinson; Kara Garcia; Matthew F. Glasser; Zhengdao Chen; Timothy S. Coalson; Antonios Makropoulos; Jelena Bozek; Robert Wright; Andreas Schuh; Matthew A. Webster; Jana Hutter; Anthony Price; et al. (NeuroImage, 2018)

Automated processing pipeline for neonatal diffusion MRI in the developing Human Connectome Project. - Matteo Bastiani; Jesper L. R. Andersson; Lucilio Cordero-Grande; Maria Murgasova; Jana Hutter; Anthony N. Price; Antonios Makropoulos; Sean P. Fitzgibbon; Emer J. Hughes; Daniel Rueckert; Suresh Victor; Mary A. Rutherford; et al. (NeuroImage, 2019)

Different patterns of cortical maturation before and after 38 weeks gestational age demonstrated by diffusion MRI in vivo. - Dafnis Batalle; Jonathan O'Muircheartaigh; Antonios Makropoulos; Christopher J. Kelly; Ralica Dimitrova; Emer J. Hughes; Joseph V. Hajnal; Hui Zhang 005; Daniel C. Alexander; A. David Edwards; Serena J. Counsell (NeuroImage, 2019)

Geometric Deep Learning for Post-Menstrual Age Prediction Based on the Neonatal White Matter Cortical Surface. - Vitalis Vosylius; Andy Wang; Cemlyn Waters; Alexey Zakharov; Francis Ward; Loïc Le Folgoc; John Cupitt; Antonios Makropoulos; Andreas Schuh; Daniel Rueckert; Amir Alansary (UNSURE/GRAIL@MICCAI, 2020)

A deep learning approach to segmentation of the developing cortex in fetal brain MRI with minimal manual labeling. - Ahmed E. Fetit; Amir Alansary; Lucilio Cordero-Grande; John Cupitt; Alice B. Davidson; A. David Edwards; Joseph V. Hajnal; Emer J. Hughes; Konstantinos Kamnitsas; Vanessa Kyriakopoulou; Antonios Makropoulos; Prachi A. Patkee; et al. (MIDL, 2020)

The developing Human Connectome Project (dHCP) automated resting-state functional processing framework for newborn infants. - Sean P. Fitzgibbon; Samuel J. Harrison; Mark Jenkinson; Luke Baxter; Emma C. Robinson; Matteo Bastiani; Jelena Bozek; Vyacheslav Karolis; Lucilio Cordero-Grande; Anthony N. Price; Emer J. Hughes; Antonios Makropoulos; et al. (NeuroImage, 2020)

CAS-Net: Conditional Atlas Generation and Brain Segmentation for Fetal MRI. - Liu Li; Matthew Sinclair; Antonios Makropoulos; Joseph V. Hajnal; A. David Edwards; Bernhard Kainz; Daniel Rueckert; Amir Alansary (UNSURE/PIPPI@MICCAI, 2021)

Preterm birth alters the development of cortical microstructure and morphology at term-equivalent age. - Ralica Dimitrova; Maximilian Pietsch; Judit Ciarrusta; Sean P. Fitzgibbon; Logan Z. J. Williams; Daan Christiaens; Lucilio Cordero-Grande; Dafnis Batalle; Antonios Makropoulos; Andreas Schuh; Anthony N. Price; Jana Hutter; et al. (NeuroImage, 2021)

Non-invasive diagnosis of deep vein thrombosis from ultrasound imaging with machine learning. - Bernhard Kainz; Mattias P. Heinrich; Antonios Makropoulos; Jonas Oppenheimer; Ramin Mandegaran; Shrinivasan Sankar; Christopher Deane; Sven Mischkewitz; Fouad Al-Noor; Andrew C. Rawdin; Andreas Ruttloff; Matthew D. Stevenson; et al. (npj Digit. Medicine, 2021)

Fetal Cortex Segmentation with Topology and Thickness Loss Constraints. - Liu Li; Qiang Ma 004; Zeju Li; Cheng Ouyang; Weitong Zhang; Anthony Price; Vanessa Kyriakopoulou; Lucilio Cordero-Grande; Antonios Makropoulos; Joseph V. Hajnal; Daniel Rueckert; Bernhard Kainz; et al. (EPIMI/ML-CDS@MICCAI, 2022)

CAS-Net: Conditional Atlas Generation and Brain Segmentation for Fetal MRI. - Liu Li; Qiang Ma 004; Matthew Sinclair; Antonios Makropoulos; Joseph V. Hajnal; A. David Edwards; Bernhard Kainz; Daniel Rueckert; Amir Alansary (CoRR, 2022)