Inferring ancient divergences requires genes with strong phylogenetic signals. - Leonidas Salichos; Antonis Rokas (Nat., 2013)

GEneSTATION 1.0: a synthetic resource of diverse evolutionary and functional genomic data for studying the evolution of pregnancy-associated tissues and phenotypes. - Mara Kim; Brian A. Cooper; Rohit Venkat; Julie B. Phillips; Haley R. Eidem; Jibril Hirbo; Sashank Nutakki; Scott M. Williams; Louis J. Muglia; J. Anthony Capra; Kenneth Petren; Patrick Abbot; et al. (Nucleic Acids Res., 2016)

PhyKIT: a broadly applicable UNIX shell toolkit for processing and analyzing phylogenomic data. - Jacob L. Steenwyk; Thomas J. Buida; Abigail L. Labella; Yuanning Li; Xing-Xing Shen; Antonis Rokas (Bioinform., 2021)

GSEL: a fast, flexible python package for detecting signatures of diverse evolutionary forces on genomic regions. - Abin Abraham; Abigail L. Labella; Mary Lauren Benton; Antonis Rokas; John A. Capra (Bioinform., 2023)