New faster CHARMM molecular dynamics engine. - Antti-Pekka Hynninen; Michael F. Crowley (J. Comput. Chem., 2014)

Early Experiences Porting the NAMD and VMD Molecular Simulation and Analysis Software to GPU-Accelerated OpenPOWER Platforms. - John E. Stone; Antti-Pekka Hynninen; James C. Phillips; Klaus Schulten (ISC Workshops, 2016)

cuTT: A High-Performance Tensor Transpose Library for CUDA Compatible GPUs. - Antti-Pekka Hynninen; Dmitry I. Lyakh (CoRR, 2017)