IDEA: Interactive Display for Evolutionary Analyses. - Amy Egan; Anup Mahurkar; Jonathan Crabtree; Jonathan H. Badger; Jane M. Carlton; Joana C. Silva (BMC Bioinform., 2008)

Ergatis: a web interface and scalable software system for bioinformatics workflows. - Joshua Orvis; Jonathan Crabtree; Kevin Galens; Aaron Gussman; Jason M. Inman; Eduardo Lee; Sreenath Nampally; David R. Riley 002; Jaideep P. Sundaram; Victor Felix; Brett Whitty; Anup Mahurkar; et al. (Bioinform., 2010)

GeMInA, Genomic Metadata for Infectious Agents, a geospatial surveillance pathogen database. - Lynn M. Schriml; Cesar Arze; Suvarna Nadendla; Anurhada Ganapathy; Victor Felix; Anup Mahurkar; Katherine H. Phillippy; Aaron Gussman; Samuel V. Angiuoli; Elodie Ghedin; Owen White; Neil Hall (Nucleic Acids Res., 2010)

Circleator: flexible circular visualization of genome-associated data with BioPerl and SVG. - Jonathan Crabtree; Sonia Agrawal; Anup Mahurkar; Garry S. A. Myers; David A. Rasko; Owen White (Bioinform., 2014)

MetaRef: a pan-genomic database for comparative and community microbial genomics. - Katherine Huang; Arthur Brady; Anup Mahurkar; Owen White; Dirk Gevers; Curtis Huttenhower; Nicola Segata (Nucleic Acids Res., 2014)

Bioinformatic analysis of bacteria and host cell dual RNA-sequencing experiments. - James W. Marsh; Regan J. Hayward; Amol Carl Shetty; Anup Mahurkar; Michael S. Humphrys; Garry S. A. Myers (Briefings Bioinform., 2018)

HMPDACC: a Human Microbiome Project Multi-omic data resource. - Heather Huot Creasy; Victor Felix; Jain Aluvathingal; Jonathan Crabtree; Olukemi O. Ifeonu; James Matsumura; Carrie McCracken; Lance Nickel; Joshua Orvis; Mike Schor; Michelle G. Giglio; Anup Mahurkar; et al. (Nucleic Acids Res., 2021)

Contextual in situ help for visual data interfaces. - Pramod Chundury; Mehmet Adil Yalçin; Jonathan Crabtree; Anup Mahurkar; Lisa M. Shulman; Niklas Elmqvist (Inf. Vis., 2023)

The Neuroscience Multi-Omic Archive: a BRAIN Initiative resource for single-cell transcriptomic and epigenomic data from the mammalian brain. - Seth A. Ament; Ricky S. Adkins; Robert Carter; Elena Chrysostomou; Carlo Colantuoni; Jonathan Crabtree; Heather Huot Creasy; Kylee Degatano; Victor Felix; Peter Gandt; Gwenn a Garden; Michelle G. Giglio; et al. (Nucleic Acids Res., 2023)