k-OptForce: Integrating Kinetics with Flux Balance Analysis for Strain Design. - Anupam Chowdhury; Ali R. Zomorrodi; Costas D. Maranas (PLoS Comput. Biol., 2014)

Bilevel optimization techniques in computational strain design. - Anupam Chowdhury; Ali R. Zomorrodi; Costas D. Maranas (Comput. Chem. Eng., 2015)