Efficient Bioinformatics Computations through GPU Accelerated Web Services. - Vijini Mallawaarachchi; Anuradha Wickramarachchi; Anuradha Welivita; Indika Perera; Dulani Meedeniya (ICACS, 2018)

Use of nomadic computing devices for storage synchronization. - Anuradha Wickramarachchi; Dulaj Atapattu; Pamoda Wimalasiri; Ravidu Mallawa Arachchi; Gihan Dias (ICOIN, 2018)

Enhanced Student Learning in Proteomics - an Interactive Tool Support for Teaching Workflows. - Anuradha Wickramarachchi; Vijini Mallawaarachchi; Dulani Meedeniya; Indika Perera; Anuradha Welivita (TALE, 2018)

MetaG: a comprehensive visualization tool to explore metagenomes. - Kalana Wijegunarathna; Uditha Maduranga; Sadeep Weerasinghe; Indika Perera; Anuradha Wickramarachchi (BIBM, 2020)

Resource Aware Task Clustering for Scientific Workflow Execution in High Performance Computing Environments. - Ayesh Weerasinghe; Kalana Wijethunga; Randika Jayasekara; Indika Perera; Anuradha Wickramarachchi (HPCC/DSS/SmartCity, 2020)

GraphBin2: Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs. - Vijini Mallawaarachchi; Anuradha Wickramarachchi; Yu Lin 001 (WABI, 2020)

GraphBin: refined binning of metagenomic contigs using assembly graphs. - Vijini Mallawaarachchi; Anuradha Wickramarachchi; Yu Lin 001 (Bioinform., 2020)

MetaBCC-LR: metagenomics binning by coverage and composition for long reads. - Anuradha Wickramarachchi; Vijini Mallawaarachchi; Vaibhav Rajan; Yu Lin 001 (Bioinform., 2020)

Phylogenetic Tree Construction Using K-Mer Forest- Based Distance Calculation. - Gihan Gamage; Nadeeshan Gimhana; Indika Perera; Shanaka Bandara; Thilina Pathirana; Anuradha Wickramarachchi; Vijini Mallawaarachchi (Int. J. Online Biomed. Eng., 2020)

LRBinner: Binning Long Reads in Metagenomics Datasets. - Anuradha Wickramarachchi; Yu Lin 001 (WABI, 2021)

Improving metagenomic binning results with overlapped bins using assembly graphs. - Vijini Mallawaarachchi; Anuradha Wickramarachchi; Yu Lin 001 (Algorithms Mol. Biol., 2021)

Metagenomics Binning of Long Reads Using Read-Overlap Graphs. - Anuradha Wickramarachchi; Yu Lin 001 (RECOMB-CG, 2022)

Binning long reads in metagenomics datasets using composition and coverage information. - Anuradha Wickramarachchi; Yu Lin 001 (Algorithms Mol. Biol., 2022)

GraphPlas: Refined Classification of Plasmid Sequences Using Assembly Graphs. - Anuradha Wickramarachchi; Yu Lin 001 (IEEE ACM Trans. Comput. Biol. Bioinform., 2022)

Solving genomic puzzles: computational methods for metagenomic binning. - Vijini Mallawaarachchi; Anuradha Wickramarachchi; Hansheng Xue; Bhavya Nalagampalli Papudeshi; Susanna R. Grigson; George Bouras; Rosa E. Prahl; Anubhav Kaphle; Andrey Verich; Berenice Talamantes-Becerra; Elizabeth A. Dinsdale; Robert A. Edwards (Briefings Bioinform., 2024)

AskBeacon - Performing genomic data exchange and analytics with natural language. - Anuradha Wickramarachchi; Shakila Tonni; Sonali Majumdar; Sarvnaz Karimi; Sulev Kõks; Brendan Hosking; Jordi Rambla; Natalie A. Twine; Yatish Jain; Denis C. Bauer (CoRR, 2024)

GraphBin-Tk: assembly graph-based metagenomic binning toolkit. - Vijini Mallawaarachchi; Anuradha Wickramarachchi; Robert McArthur; Yapeng Lang; Katherine Caley; Gavin A. Huttley (J. Open Source Softw., 2025)