BioCreative VI Precision Medicine Track system performance is constrained by entity recognition and variations in corpus characteristics. - Qingyu Chen 001; Nagesh C. Panyam; Aparna Elangovan; Karin Verspoor (Database J. Biol. Databases Curation, 2018)

Overview of the BioCreative VI Precision Medicine Track: mining protein interactions and mutations for precision medicine. - Rezarta Islamaj Dogan; Sun Kim; Andrew Chatr-aryamontri; Chih-Hsuan Wei; Donald C. Comeau; Rui Antunes 002; Sérgio Matos; Qingyu Chen 001; Aparna Elangovan; Nagesh C. Panyam; Karin Verspoor; Hongfang Liu; et al. (Database J. Biol. Databases Curation, 2019)

Assigning function to protein-protein interactions: a weakly supervised BioBERT based approach using PubMed abstracts. - Aparna Elangovan; Melissa J. Davis; Karin Verspoor (CoRR, 2020)

Memorization vs. Generalization : Quantifying Data Leakage in NLP Performance Evaluation. - Aparna Elangovan; Jiayuan He 002; Karin Verspoor (EACL, 2021)

Large-scale protein-protein post-translational modification extraction with distant supervision and confidence calibrated BioBERT. - Aparna Elangovan; Yuan Li 012; Douglas E. V. Pires; Melissa J. Davis; Karin Verspoor (BMC Bioinform., 2022)

Effects of Human Adversarial and Affable Samples on BERT Generalizability. - Aparna Elangovan; Estrid He; Yuan Li 012; Karin Verspoor (EMNLP (Findings), 2023)

Generalization Lessons from Biomedical Relation Extraction using Pretrained Transformer Models. - Aparna Elangovan (2023)

ConSiDERS-The-Human Evaluation Framework: Rethinking Human Evaluation for Generative Large Language Models. - Aparna Elangovan; Ling Liu; Lei Xu 040; Sravan Babu Bodapati; Dan Roth (ACL (1), 2024)

Salient Information Prompting to Steer Content in Prompt-based Abstractive Summarization. - Lei Xu 040; Mohammed Asad Karim; Saket Dingliwal; Aparna Elangovan (EMNLP (Industry Track), 2024)

Principles from Clinical Research for NLP Model Generalization. - Aparna Elangovan; Jiayuan He 002; Yuan Li 012; Karin Verspoor (NAACL-HLT, 2024)

Beyond correlation: The impact of human uncertainty in measuring the effectiveness of automatic evaluation and LLM-as-a-judge. - Aparna Elangovan; Lei Xu 040; Jongwoo Ko; Mahsa Elyasi; Ling Liu; Sravan Babu Bodapati; Dan Roth (ICLR, 2025)