LinearSankoff: Linear-time Simultaneous Folding and Alignment of RNA Homologs. - Sizhen Li; Ning Dai; He Zhang; Apoorv Malik; David H. Mathews; Liang Huang 001 (CoRR, 2023)

Scalable and Interpretable Identification of Minimal Undesignable RNA Structure Motifs with Rotational Invariance. - Tianshuo Zhou; Apoorv Malik; Wei Yu Tang; David H. Mathews; Liang Huang 001 (RECOMB, 2025)