GSEA-P: a desktop application for Gene Set Enrichment Analysis. - Aravind Subramanian; Heidi Kuehn; Joshua Gould; Pablo Tamayo; Jill P. Mesirov (Bioinform., 2007)

Molecular signatures database (MSigDB) 3.0. - Arthur Liberzon; Aravind Subramanian; Reid Pinchback; Helga Thorvaldsdóttir; Pablo Tamayo; Jill P. Mesirov (Bioinform., 2011)

SNP-based pathway enrichment analysis for genome-wide association studies. - Lingjie Weng; Fabio Macciardi; Aravind Subramanian; Guia Guffanti; Steven G. Potkin; Zhaoxia Yu; Xiaohui Xie (BMC Bioinform., 2011)

LINCS Canvas Browser: interactive web app to query, browse and interrogate LINCS L1000 gene expression signatures. - Qiaonan Duan; Corey Flynn; Mario Niepel; Marc Hafner; Jeremy Muhlich; Nicolas F. Fernandez; Andrew D. Rouillard; Christopher M. Tan; Edward Y. Chen; Todd R. Golub; Peter K. Sorger; Aravind Subramanian; et al. (Nucleic Acids Res., 2014)

Gene expression inference with deep learning. - Yifei Chen; Yi Li 021; Rajiv Narayan; Aravind Subramanian; Xiaohui Xie (Bioinform., 2016)

The GCTx format and cmap{Py, R, M, J} packages: resources for optimized storage and integrated traversal of annotated dense matrices. - Oana M. Enache; David L. Lahr; Ted E. Natoli; Lev Litichevskiy; David Wadden; Corey Flynn; Joshua Gould; Jacob K. Asiedu; Rajiv Narayan; Aravind Subramanian (Bioinform., 2019)

3D Conditional Generative Adversarial Networks to enable large-scale seismic image enhancement. - Praneet Dutta; Bruce Power; Adam Halpert; Carlos Ezequiel; Aravind Subramanian; Chanchal Chatterjee; Sindhu Hari; Kenton Prindle; Vishal Vaddina; Andrew Leach; Raj Domala; Laura Bandura; et al. (CoRR, 2019)

Improving deconvolution methods in biology through open innovation competitions: an application to the connectivity map. - Andrea Blasco; Ted Natoli; Michael G. Endres; Rinat A. Sergeev; Steven Randazzo; Jin H. Paik; N. J. Maximilian Macaluso; Rajiv Narayan; Xiaodong Lu; David Peck; Karim R. Lakhani; Aravind Subramanian (Bioinform., 2021)